CCDS Report for Consensus CDS

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Report for CCDS59424.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
59424.1	Public	Homo sapiens	19	SSC5D	24	110	108

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59424.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000587166.5	ENSP00000467252.1		Accepted	alive
		NCBI	NM_001195267.2	NP_001182196.1		Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001182196.1	951	A1L4H1-2	951	100%	0	0

Chromosomal Locations for CCDS 59424.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)

Genome Browser links:

Chromosome	Start	Stop
19	55488590	55488614
19	55489006	55489032
19	55489354	55489662
19	55489882	55489995
19	55490298	55490408
19	55490772	55491080
19	55493595	55493912
19	55494610	55494783
19	55497880	55498197
19	55499816	55500412
19	55500490	55500804
19	55501034	55501201
19	55504116	55504186

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2856 nt):
ATGAGGGTCTTGGCCTGCCTCCTTGCGGCCCTGGTGGGGATCCAGGCTGTTGAGCGCCTGCGCCTGGCCG ATGGCCCCCATGGGTGCGCTGGCCGCCTGGAGGTCTGGCATGGCGGGCGCTGGGGCACCGTGTGTGATGA CGGCTGGGACCTGCGCGATGCCGCCGTGGCCTGCCGGCAGCTGGGCTGCGGAGGGGCACTGGCCGCCCCG GGAGGCGCCTTCTTCGGGGAGGGGGCAGGGCCTGTGTGGCTCAGCGAGCTGGCTTGCCGGGGCAACGAGG GGCAGCTGGGCCTCTGCCACCACCGGGGCTGGAAGGCCCACATCTGCTCCCACGAGGAGGACGCGGGCGT CGTCTGCGCAGGTCAGCGTGTGGCTAACTCCAGGGACGACTCAACATCTCCCCTGGATGGGGCTCCCTGG CCAGGGCTGTTGCTGGAGCTGAGCCCCAGCACGGAGGAGCCCCTGGTGACACATGCCCCCCGCCCAGCTG GGAACCCCCAGAACGCCTCCCGGAAGAAGAGCCCCCGGCCCAAGCAGGCCAAGTCCACCCGGGCCCCTCT GCTGACGACAGGAGCCCCCCGCCAAGAGCGGCTGCGCCTGGTCTCTGGCCCCCACAGGTGCGCCGGACGC CTGGAGGTCTGGCACGGCGGGCGCTGGGGCACCGTATGTGACGATGGCTGGGACCTGCGCGACGCTGCTG TAGCCTGCCGGGAACTGGGCTGTGGGGGGGCGCTGGCTGCCCCCGGCGGTGCCAGATTCGGGCCTGGTGC AGGGCCCGTGTGGATGGACGATGTGGGGTGTGGAGGAGGAGAACAGGCCCTCCGAGACTGCCCCCGAAGC CCCTGGGGCCGGAGCAACTGTGACCACAGCGAGGATGCGGGGCTGGTCTGCACCGGCCCAGCACCTCGGC TGCGCCTGGCCGATGGCCCCCACGGGTGCGCCGGCCGCCTGGAGGTCTGGCACGGGGGTCGCTGGGGGTC GGTGTGTGACGACGCCTGGGACCTGCGAGACGCCGCTGTGGCCTGCCGAGAGCTGGGCTGCGGAGGGGCG CTGGCCGCCCCCGGGGGCGCCTTCTTTGGGGAGGGGTCTGGACCCATCATCCTGGACGACCTTCGGTGTC GGGGAAACGAGACGGCCTTACGATTCTGCCCAGCTCGGCCCTGGGGCCAGCATGACTGTCACCACCGCGA GGACGCCGGGGCCGTGTGTGACGGCATGCCCCTGGGCTACGTCCCTCCCACGGCCCCCACGGACAGCAAC AACTCCACGCCCAGGGAGGCTGCCTCCAGGCCCCCGTCCACCATGACGAGCCAGGCTCCAGGGACGGCAG GCGTTTCACCTCCTCCAGCCTCCCCTACTGTCCTTTGGGAGCCTGGACCGGAAGCCGGGTCCCCCCAGCT GCGCCTGGTGGCTGGGCCCAGCAAGTGCTCAGGTCGACTGGAGGTGTGGCATGACCAGCGCTGGGGGACC GTGTGTGACGATAGCTGGGACATGCGGGATTCAGCTGTGGTCTGCCGGGAGCTGGGCTGTGGTGGACCTC AGCAGCCAGACCCTGCTGCTGGCCGCTTTGGCTGGGGTGCGGGCCCCATCTGGCTAGATGATGTGGGCTG TGTGGGGACCGAGGCTTCACTGTCCGACTGCCCTGCTGCTCCCTGGGGAAAGCACAACTGCGCTCACAAT GAGGATGTTGGGGTCACCTGCACTGGGCCCCCAGGCCTGGACTCCATCTCAGACCCCTTCAGCTGGAGCT GGATTCCTGGACTGGGGAGAGATCGGGATGCCTGGCTCCCGGGAGAGCTGGCCACCAAGCCCTCTGCAAG TGTGACTGCCAGTGTTCTGGAGAAAACAACCACGAAGGCCCCAGGGAAAATGCCTAAGAGTACTAAGAAG TGGGTGACAAAAAATGCAAAGAGACCAACCACTCAACCCCCAGTGATGCCAACCACGAAACACTCCAGGG CCCAAAGCCCCCCAGACCTAACCTCACAGACCACTGCAGCACTGACCACTGAGGCCTCCCGAAGACCTAC CTCTGAGTTTACCAGAAGGCCGACCACGGAGGCCCCCCAGAGATGGACCTCTCACACCACTGCCACGCTG ACCCCTCAGGCCCCCCGAGAACGGACCACTAAGACCATGGCAATGCTGACCACTCAAGGCCCCCAAGAAA TGACCTCTGAGTCCACTATCAAGAGTATCCCTCAGGCCTCCCTGGAGCCATCTGCTGAGATCCCAGAAGG GTCTCCAGAGTCACCCAAAGACCCGGCCCCCTCTCCCAGTGTTAGCACCACTGGGGAATCAGGCCTGTTC CGGGTTCGTCTGGCCGATGGGCCCAACCGCTGTGCTGGCCGGCTGGAAGTGTGGCATGCCGGACGCTGGG GAACAGTGTGTGATGACAACTGGGACCTGCGGGACGCCACTGTGGCCTGCTGGGAACTGGGCTGTGGAAA GGTCCGGCCTCGAGTAGGCAAAACCCATTACGGCCCTGGGACTGGGCCCATCTGGCTGGATGACATGGGC TGTAAGGGAAGCGAGGCCTCACTGAGCGACTGCCCCTCGGGGGCTTGGGGGAAGCACAACTGTGACCACG AGGAAGACGTGGGGCTCACCTGCACTGGCTACACAGACTATGACGATTATCCCCCCTGGACCTGGGACCC CACCTCAAGAGAGGACCTGGCCAAGGGGACTACCACAGCGGGGGTACCTGGACACACTCTCCCCTGGAGG ACCACCCGGCGCCCGGGTAGCTCCTCCCCAGCAATAAGGCGCCTGCCGGACACAGAGCCGGAAGCGGGAG CTCCGAGAGGTGATGCTCCTCGTTCAAGGACTGCCAGGGTTGCAGCGCCTCCCTAG
Translation (951 aa):
MRVLACLLAALVGIQAVERLRLADGPHGCAGRLEVWHGGRWGTVCDDGWDLRDAAVACRQLGCGGALAAP GGAFFGEGAGPVWLSELACRGNEGQLGLCHHRGWKAHICSHEEDAGVVCAGQRVANSRDDSTSPLDGAPW PGLLLELSPSTEEPLVTHAPRPAGNPQNASRKKSPRPKQAKSTRAPLLTTGAPRQERLRLVSGPHRCAGR LEVWHGGRWGTVCDDGWDLRDAAVACRELGCGGALAAPGGARFGPGAGPVWMDDVGCGGGEQALRDCPRS PWGRSNCDHSEDAGLVCTGPAPRLRLADGPHGCAGRLEVWHGGRWGSVCDDAWDLRDAAVACRELGCGGA LAAPGGAFFGEGSGPIILDDLRCRGNETALRFCPARPWGQHDCHHREDAGAVCDGMPLGYVPPTAPTDSN NSTPREAASRPPSTMTSQAPGTAGVSPPPASPTVLWEPGPEAGSPQLRLVAGPSKCSGRLEVWHDQRWGT VCDDSWDMRDSAVVCRELGCGGPQQPDPAAGRFGWGAGPIWLDDVGCVGTEASLSDCPAAPWGKHNCAHN EDVGVTCTGPPGLDSISDPFSWSWIPGLGRDRDAWLPGELATKPSASVTASVLEKTTTKAPGKMPKSTKK WVTKNAKRPTTQPPVMPTTKHSRAQSPPDLTSQTTAALTTEASRRPTSEFTRRPTTEAPQRWTSHTTATL TPQAPRERTTKTMAMLTTQGPQEMTSESTIKSIPQASLEPSAEIPEGSPESPKDPAPSPSVSTTGESGLF RVRLADGPNRCAGRLEVWHAGRWGTVCDDNWDLRDATVACWELGCGKVRPRVGKTHYGPGTGPIWLDDMG CKGSEASLSDCPSGAWGKHNCDHEEDVGLTCTGYTDYDDYPPWTWDPTSREDLAKGTTTAGVPGHTLPWR TTRRPGSSSPAIRRLPDTEPEAGAPRGDAPRSRTARVAAPP

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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