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Report for CCDS64328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64328.1 Public Homo sapiens 5 PRELID1 24 110 108 CCDS HistoryNCBI Gene:27166Re-query CCDS DB by CCDS ID:64328.1Re-query CCDS DB by GeneID:27166See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 64328.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000503216.5 ENSP00000427097.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503216.5Link to Ensembl Protein Viewer:ENSP00000427097.1Re-query CCDS DB by Nucleotide ID:ENST00000503216Re-query CCDS DB by Protein ID:ENSP00000427097
Original member Current member NCBI NM_001271828.2 NP_001258757.1 Accepted alive Link to Nucleotide Sequence:NM_001271828.2Link to Protein Sequence:NP_001258757.1Re-query CCDS DB by Nucleotide ID:NM_001271828Re-query CCDS DB by Protein ID:NP_001258757Link to BLAST:NP_001258757.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258757.1 208 Q9Y255-2 208 100% 0 0

Chromosomal Locations for CCDS 64328.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 177303986 177304077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177304625 177304850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177305871 177305984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177306098 177306176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177306455 177306570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGGTGAAGTATTTCCTGGGCCAGAGCGTGCTCCGGAGTTCCTGGGACCAAGTGTTCGCCGCCTTCTGGC
AGCGGTACCCGAATCCCTATAGCAAACATGTCTTGACGGAAGACATAGTACACCGGGAGGTGACCCCTGA
CCAGAAACTGCTGTCCCGGCGACTCCTGACCAAGACCAACAGGATGCCACGCTGGGCCGAGCGACTATTT
CCTGCCAATGTTGCTCACTCGGTGTACGTCCTGGAGGACTCTATTGTGGACCCACAGAATCAGACCATGA
CTACCTTCACCTGGAACATCAACCACGCCCGGCTGATGGTGGTGGAGGAACGATGTGTTTACTGTGTGAA
CTCTGACAACAGTGGCTGGACTGAAATCCGCCGGGAAGCCTGGGTCTCCTCTAGCTTATTTGGTGTCTCC
AGAGCTGTCCAGGAATTTGGTCTTGCCCGATTCAAAAGCAACGTGACCAAGACTATGAAGGGTTTTGAAT
ATATCTTGGCTAAGCTGCAAGCCAAGGAAGCCAAGGAGAAGGCAAAGGAGACGGCACTGGCAGCTACAGA
GAAGGCCAAGGACCTCGCCAGCAAGGCGGCCACCAAGAAGCAGCAGCAGCAGCAACAGTTTGTGTAG

Translation (208 aa):
MVKYFLGQSVLRSSWDQVFAAFWQRYPNPYSKHVLTEDIVHREVTPDQKLLSRRLLTKTNRMPRWAERLF
PANVAHSVYVLEDSIVDPQNQTMTTFTWNINHARLMVVEERCVYCVNSDNSGWTEIRREAWVSSSLFGVS
RAVQEFGLARFKSNVTKTMKGFEYILAKLQAKEAKEKAKETALAATEKAKDLASKAATKKQQQQQQFV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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