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Report for CCDS41715.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41715.1 Public Homo sapiens 11 NKAPD1 24 110 108 CCDS HistoryNCBI Gene:55216Re-query CCDS DB by CCDS ID:41715.1Re-query CCDS DB by GeneID:55216See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41715.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000280352.13 ENSP00000339076.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000280352.13Link to Ensembl Protein Viewer:ENSP00000339076.7Re-query CCDS DB by Nucleotide ID:ENST00000280352Re-query CCDS DB by Protein ID:ENSP00000339076
Original member Current member EBI ENST00000420986.6 ENSP00000402208.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420986.6Link to Ensembl Protein Viewer:ENSP00000402208.2Re-query CCDS DB by Nucleotide ID:ENST00000420986Re-query CCDS DB by Protein ID:ENSP00000402208
Original member Current member NCBI NM_001082970.2 NP_001076439.1 Accepted alive Link to Nucleotide Sequence:NM_001082970.2Link to Protein Sequence:NP_001076439.1Re-query CCDS DB by Nucleotide ID:NM_001082970Re-query CCDS DB by Protein ID:NP_001076439Link to BLAST:NP_001076439.1
Original member Current member NCBI NM_001301017.2 NP_001287946.1 Accepted alive Link to Nucleotide Sequence:NM_001301017.2Link to Protein Sequence:NP_001287946.1Re-query CCDS DB by Nucleotide ID:NM_001301017Re-query CCDS DB by Protein ID:NP_001287946Link to BLAST:NP_001287946.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076439.1 292 Q6ZUT1-1 292 100% 0 0
NP_001287946.1 292 Q6ZUT1-1 292 100% 0 0

Chromosomal Locations for CCDS 41715.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 112075575 112075643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112078215 112078315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112080409 112080558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112081982 112082035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112082468 112082972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGTCCCGGATTCCACTGGGGAAGGTCCTCCTGAGGAATGTCATCCGGCACACAGATGCTCACAATAAGA
TTCAGGAGGAATCAGATATGTGGAAAATAAGAGAACTGGAAAAACAGATGGAAGATGCTTACCGGGGGAC
CAAAAGGAAAATGCTACCCAGCAGTTCAAGCCGGATGCGCAGTGATGGTTTTGATGAAGAAAGTCAAAGA
TACTATTGGAGGCCAAAGAATGAAATTTCTGGGACACTGGAAGATGATTTTCTTAAGGCTAAATCCTGGA
ATAAAAAGTTCTATGATTATGAAGCAAACATGCCAGACAGATGGGGTCACAGTGGTTATAAAGAGTTATA
CCCTGAAGAATTTGAAACAGACAGTGATCAGCAAGATATTACCAACGGGAAGAAAACATCTCCCCAGGTA
AAGTCATCTACCCATGAATCCCGCAAACACAAGAAGTCAAAGAAATCCCACAAAAAAAAGCAGAAAAAAA
GGTCACACAAAAAACAGAAGAAAAGCAAAAAGGAAGCCACAGATATAACAGCAGATTCCTCGAGTGAGTT
CTCAGAAGAAACTGGGGCTTCTGGTACAAGGAAAGGGAAACAACCACATAAACGCAAGAAAAAATCCAGG
AAAAAGTCTCTCAAAAAACCTGCTTTATTCTTAGAGGCAGAAAGTAACACTTCACATTCAGATGATTCAG
CATCCAGCAGTTCTGAGGAAAGTGAGGAAAGAGACACTAAGAAAACCAAAAGGAAAAAGAGAGAGAAAAA
AGCCCATACCTCTGTAGCCAACAATGAAATACAGGAGAGGACAAACAAACGCACAAATTGGAAAGTAGCT
ACAGATGAAAGGTCTGCTGAGAGCTCAGAGGATGACTAA

Translation (292 aa):
MSRIPLGKVLLRNVIRHTDAHNKIQEESDMWKIRELEKQMEDAYRGTKRKMLPSSSSRMRSDGFDEESQR
YYWRPKNEISGTLEDDFLKAKSWNKKFYDYEANMPDRWGHSGYKELYPEEFETDSDQQDITNGKKTSPQV
KSSTHESRKHKKSKKSHKKKQKKRSHKKQKKSKKEATDITADSSSEFSEETGASGTRKGKQPHKRKKKSR
KKSLKKPALFLEAESNTSHSDDSASSSSEESEERDTKKTKRKKREKKAHTSVANNEIQERTNKRTNWKVA
TDERSAESSEDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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