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Report for CCDS5990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5990.1 Public Homo sapiens 8 DLC1 24 110 108 CCDS HistoryNCBI Gene:10395Re-query CCDS DB by CCDS ID:5990.1Re-query CCDS DB by GeneID:10395See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5990.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358919.6 ENSP00000351797.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358919.6Link to Ensembl Protein Viewer:ENSP00000351797.2Re-query CCDS DB by Nucleotide ID:ENST00000358919Re-query CCDS DB by Protein ID:ENSP00000351797
Original member Current member NCBI NM_006094.5 NP_006085.2 Accepted alive Link to Nucleotide Sequence:NM_006094.5Link to Protein Sequence:NP_006085.2Re-query CCDS DB by Nucleotide ID:NM_006094Re-query CCDS DB by Protein ID:NP_006085Link to BLAST:NP_006085.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006085.2 1091 Q96QB1-1 1091 100% 0 0

Chromosomal Locations for CCDS 5990.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 13085811 13085931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13086290 13086463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13088487 13088704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13090252 13090470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13091318 13091432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13092612 13092825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13094759 13094957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13095086 13095245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13098399 13098575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13099347 13100770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13102790 13102853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13110742 13110823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13115586 13115657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13132944 13132980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3276 nt):
ATGTGCAGAAAGAAGCCGGACACCATGATCCTAACACAAATTGAAGCCAAGGAAGCTTGTGATTGGCTAC
GGGCAACTGGTTTCCCCCAGTATGCACAGCTTTATGAAGATTTCCTGTTCCCCATCGATATTTCCTTGGT
CAAGAGAGAGCATGATTTTTTGGACAGAGATGCCATTGAGGCTCTATGCAGGCGTCTAAATACTTTAAAC
AAATGTGCGGTGATGAAGCTAGAAATTAGTCCTCATCGGAAACGAAGTGACGATTCAGACGAGGATGAGC
CTTGTGCCATCAGTGGCAAATGGACTTTCCAAAGGGACAGCAAGAGGTGGTCCCGGCTTGAAGAGTTTGA
TGTCTTTTCTCCAAAACAAGACCTGGTCCCTGGGTCCCCAGACGACTCCCACCCGAAGGACGGCCCCAGC
CCCGGAGGCACGCTGATGGACCTCAGCGAGCGCCAGGAGGTGTCTTCCGTCCGCAGCCTCAGCAGCACTG
GCAGCCTCCCCAGCCACGCGCCCCCCAGCGAGGATGCTGCCACCCCCCGGACTAACTCCGTCATCAGCGT
TTGCTCCTCCAGCAACTTGGCAGGCAATGACGACTCTTTCGGCAGCCTGCCCTCTCCCAAGGAACTGTCC
AGCTTCAGCTTCAGCATGAAAGGCCACGAAAAAACTGCCAAGTCCAAGACGCGCAGTCTGCTGAAACGGA
TGGAGAGCCTGAAGCTCAAGAGCTCCCATCACAGCAAGCACAAAGCGCCCTCAAAGCTGGGGTTGATCAT
CAGCGGGCCCATCTTGCAAGAGGGGATGGATGAGGAGAAGCTGAAGCAGCTCAACTGCGTGGAGATCTCC
GCCCTCAATGGCAACCGCATCAACGTCCCCATGGTACGAAAGAGGAGCGTTTCCAACTCCACGCAGACCA
GCAGCAGCAGCAGCCAGTCGGAGACCAGCAGCGCGGTCAGCACGCCCAGCCCTGTTACGAGGACCCGGAG
CCTCAGTGCGTGCAACAAGCGGGTGGGCATGTACTTAGAGGGCTTCGATCCTTTCAATCAGTCAACATTT
AACAACGTGGTGGAGCAGAACTTTAAGAACCGCGAGAGCTACCCAGAGGACACGGTGTTCTACATCCCTG
AAGATCACAAGCCTGGCACTTTCCCCAAAGCTCTCACCAATGGCAGTTTCTCCCCCTCGGGGAATAACGG
CTCTGTGAACTGGAGGACGGGAAGCTTCCACGGCCCTGGCCACATCAGCCTCAGGAGGGAAAACAGTAGC
GACAGCCCCAAGGAACTGAAGAGACGCAATTCTTCCAGCTCCATGAGCAGCCGCCTGAGCATCTACGACA
ACGTGCCGGGCTCCATCCTCTACTCCAGTTCAGGGGACCTGGCGGATCTGGAGAACGAGGACATCTTCCC
CGAGCTGGACGACATCCTCTACCACGTGAAGGGGATGCAGCGGATAGTCAATCAGTGGTCGGAGAAGTTT
TCTGATGAGGGAGATTCGGACTCAGCCCTGGACTCGGTCTCTCCCTGCCCGTCCTCTCCAAAACAGATAC
ACCTGGATGTGGACAACGACCGAACCACACCCAGCGACCTGGACAGCACAGGCAACTCCCTGAATGAACC
GGAAGAGCCCTCCGAGATCCCGGAAAGAAGGGATTCTGGGGTTGGGGCTTCCCTAACCAGGTCCAACAGG
CACCGACTGAGATGGCACAGTTTCCAGAGCTCACATCGGCCAAGCCTCAACTCTGTATCACTACAGATTA
ACTGCCAGTCTGTGGCCCAGATGAACCTGCTGCAGAAATACTCACTCCTAAAGCTAACGGCCCTGCTGGA
GAAATACACACCTTCTAACAAGCATGGTTTTAGCTGGGCCGTGCCCAAGTTCATGAAGAGGATCAAGGTT
CCAGACTACAAGGACCGGAGTGTGTTTGGGGTCCCACTGACGGTCAACGTGCAGCGCACAGGACAACCGT
TGCCTCAGAGCATCCAGCAGGCCATGCGATACCTCCGGAACCATTGTTTGGATCAGGTTGGGCTCTTCAG
AAAATCGGGGGTCAAGTCCCGGATTCAGGCTCTGCGCCAGATGAATGAAGGTGCCATAGACTGTGTCAAC
TACGAAGGACAGTCTGCTTATGACGTGGCAGACATGCTGAAGCAGTATTTTCGAGATCTTCCTGAGCCAC
TAATGACGAACAAACTCTCGGAAACCTTTCTACAGATCTACCAATATGTGCCCAAGGACCAGCGCCTGCA
GGCCATCAAGGCTGCCATCATGCTGCTGCCTGACGAGAACCGGGAGGTTCTGCAGACCCTGCTTTATTTC
CTGAGCGATGTCACAGCAGCCGTAAAAGAAAACCAGATGACCCCAACCAACCTGGCCGTGTGCTTAGCGC
CTTCCCTCTTCCATCTCAACACCCTGAAGAGAGAGAATTCCTCTCCCAGGGTAATGCAAAGAAAACAAAG
TTTGGGCAAACCAGATCAGAAAGATTTGAATGAAAACCTAGCTGCCACTCAAGGGCTGGCCCATATGATC
GCCGAGTGCAAGAAGCTTTTCCAGGTTCCCGAGGAAATGAGCCGATGTCGTAATTCCTATACCGAACAAG
AGCTGAAGCCCCTCACTCTGGAAGCACTCGGGCACCTGGGTAATGATGACTCAGCTGACTACCAACACTT
CCTCCAGGACTGTGTGGATGGCCTGTTTAAAGAAGTCAAAGAGAAGTTTAAAGGCTGGGTCAGCTACTCC
ACTTCGGAGCAGGCTGAGCTGTCCTATAAGAAGGTGAGCGAAGGACCCCCTCTGAGGCTTTGGAGGTCAG
TCATTGAAGTCCCTGCTGTGCCAGAGGAAATCTTAAAGCGCCTACTTAAAGAACAGCACCTCTGGGATGT
AGACCTGTTGGATTCAAAAGTGATCGAAATTCTGGACAGCCAAACTGAAATTTACCAGTATGTCCAAAAC
AGTATGGCACCTCATCCTGCTCGAGACTACGTTGTTTTAAGAACCTGGAGGACTAATTTACCCAAAGGAG
CCTGTGCCCTTTTACTAACCTCTGTGGATCACGATCGCGCACCTGTGGTGGGTGTGAGGGTTAATGTGCT
CTTGTCCAGGTATTTGATTGAACCCTGTGGGCCAGGAAAATCCAAACTCACCTACATGTGCAGAGTTGAC
TTAAGGGGCCACATGCCAGAATGGTACACAAAATCTTTTGGACATTTGTGTGCAGCTGAAGTTGTAAAGA
TCCGGGATTCCTTCAGTAACCAGAACACTGAAACCAAAGACACCAAATCTAGGTGA

Translation (1091 aa):
MCRKKPDTMILTQIEAKEACDWLRATGFPQYAQLYEDFLFPIDISLVKREHDFLDRDAIEALCRRLNTLN
KCAVMKLEISPHRKRSDDSDEDEPCAISGKWTFQRDSKRWSRLEEFDVFSPKQDLVPGSPDDSHPKDGPS
PGGTLMDLSERQEVSSVRSLSSTGSLPSHAPPSEDAATPRTNSVISVCSSSNLAGNDDSFGSLPSPKELS
SFSFSMKGHEKTAKSKTRSLLKRMESLKLKSSHHSKHKAPSKLGLIISGPILQEGMDEEKLKQLNCVEIS
ALNGNRINVPMVRKRSVSNSTQTSSSSSQSETSSAVSTPSPVTRTRSLSACNKRVGMYLEGFDPFNQSTF
NNVVEQNFKNRESYPEDTVFYIPEDHKPGTFPKALTNGSFSPSGNNGSVNWRTGSFHGPGHISLRRENSS
DSPKELKRRNSSSSMSSRLSIYDNVPGSILYSSSGDLADLENEDIFPELDDILYHVKGMQRIVNQWSEKF
SDEGDSDSALDSVSPCPSSPKQIHLDVDNDRTTPSDLDSTGNSLNEPEEPSEIPERRDSGVGASLTRSNR
HRLRWHSFQSSHRPSLNSVSLQINCQSVAQMNLLQKYSLLKLTALLEKYTPSNKHGFSWAVPKFMKRIKV
PDYKDRSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVN
YEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYF
LSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLKRENSSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMI
AECKKLFQVPEEMSRCRNSYTEQELKPLTLEALGHLGNDDSADYQHFLQDCVDGLFKEVKEKFKGWVSYS
TSEQAELSYKKVSEGPPLRLWRSVIEVPAVPEEILKRLLKEQHLWDVDLLDSKVIEILDSQTEIYQYVQN
SMAPHPARDYVVLRTWRTNLPKGACALLLTSVDHDRAPVVGVRVNVLLSRYLIEPCGPGKSKLTYMCRVD
LRGHMPEWYTKSFGHLCAAEVVKIRDSFSNQNTETKDTKSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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