CCDS Report for Consensus CDS

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Report for CCDS54321.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
54321.1	Public	Homo sapiens	19	PTPRH	24	110	108

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54321.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000263434.5	ENSP00000263434.4		Accepted	alive
		NCBI	NM_001161440.3	NP_001154912.2		Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001154912.2	937	Q9HD43-3	937	100%	0	0

Chromosomal Locations for CCDS 54321.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)

Genome Browser links:

Chromosome	Start	Stop
19	55181754	55181903
19	55182016	55182151
19	55185502	55185662
19	55185862	55185984
19	55186225	55186359
19	55186464	55186540
19	55187513	55187603
19	55188078	55188168
19	55191501	55191548
19	55191663	55191741
19	55196522	55196788
19	55197117	55197416
19	55198643	55198912
19	55200236	55200502
19	55202056	55202322
19	55206689	55206955
19	55207166	55207199
19	55209383	55209433

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2814 nt):
ATGGCTGGGGCTGGCGGGGGCCTCGGGGTCTGGGGGAACCTGGTGCTGCTGGGCCTGTGCAGCTGGACAG GGGCCAGGGCGCCTGCCCCCAACCCAGGGAGGAACCTGACAGTGGAGACTCAGACCACCAGCTCCATCTC CCTGAGCTGGGAGGTCCCCGATGGCCTAGACTCACAGAACTCCAACTACTGGGTTCAGTGTACTGGAGAC GGCGGCACAACAGAGACTCGAAACACAACAGCCACCAACGTCACCGTGGATGGCCTTGGACCCGGGTCAT TGTATACGTGTTCTGTGTGGGTGGAGAAAGACGGAGTAAATAGCTCTGTGGGGACTGTCACTACTGCCAC AGCTCCCAACCCAGTGAGAAACCTGACAGTGGAGGCTCAGACCAACAGCTCCATCGCCCTGACCTGGGAG GTCCCCGATGGCCCAGACCCACAGAACTCCACCTACGGGGTTGAGTACACTGGAGATGGTGGCAGAGCAG GGACTCGAAGCACAGCACACACCAACATCACCGTGGATAGACTTGAACCCGGGTGTTTGTATGTGTTTTC CGTGTGGGTGGGGAAGAATGGAATCAACAGCTCCCGGGAGACTCGAAATGCCACCACAGCCCCCAACCCA GTGAGAAACCTCCATATGGAGACTCAGACCAACAGCTCCATCGCCCTATGCTGGGAAGTCCCCGATGGCC CATACCCTCAGGACTACACCTACTGGGTAGAGTACACTGGAGACGGTGGTGGCACAGAGACCCGAAACAC AACAAATACCAGTGTGACAGCTGAGAGACTTGAGCCCGGAACCTTGTACACATTCTCTGTATGGGCAGAA AAAAATGGAGCACGTGGCTCCAGGCAGAATGTCAGCATCTCCACAGTCCCCAACGCAGTGACAAGCCTCA GCAAGCAGGACTGGACCAACAGCACCATTGCTTTGCGCTGGACAGCTCCCCAGGGCCCAGGCCAGTCTTC CTACAGCTACTGGGTCTCATGGGTCAGGGAAGGCATGACTGACCCCAGGACCCAAAGCACCTCAGGTACT GACATCACCCTAAAGGAACTGGAAGCTGGCAGCCTGTACCACCTCACCGTCTGGGCCGAGAGGAATGAGG TCAGAGGCTATAACAGCACCCTCACTGCAGCCACTGCTCCCAATGAGGTCACAGATCTCCAGAATGAAAC TCAGACTAAGAACTCAGTCATGCTGTGGTGGAAGGCCCCTGGAGACCCCCACTCTCAGTTGTACGTATAC TGGGTCCAGTGGGCCAGCAAGGGACATCCCCGGAGGGGGCAAGATCCCCAAGCGAATTGGGTCAACCAGA CCAGCAGGACCAATGAGACGTGGTACAAAGTGGAGGCCCTGGAACCCGGGACGTTGTACAATTTCACCGT GTGGGCAGAGAGGAATGACGTAGCCAGTTCCACGCAGAGCCTCTGTGCGTCCACATACCCAGACACAGTC ACCATCACTTCCTGTGTCAGCACCTCAGCGGGCTATGGAGTCAACTTGATCTGGTCCTGCCCCCAGGGAG GCTACGAGGCCTTTGAGTTGGAGGTGGGAGGACAGCGGGGCTCCCAGGACAGATCTTCATGTGGGGAGGC TGTGTCTGTGTTGGGTCTCGGGCCGGCTCGGTCCTACCCAGCCACCATCACGACCATCTGGGACGGAATG AAGGTCGTGTCTCACTCTGTGGTCTGCCACACCGAGAGTGCAGGGGTCATTGCCGGAGCCTTTGTGGGCA TCCTCCTGTTTCTCATCCTCGTGGGCCTGCTGATTTTCTTCCTGAAGAGGAGGAATAAGAAGAAGCAGCA GAAACCAGAACTCAGGGATCTGGTCTTTAGCTCCCCAGGGGACATCCCAGCTGAAGACTTCGCTGACCAC GTCAGGAAGAATGAGAGGGACAGCAACTGTGGTTTTGCAGACGAGTACCAGCAACTCTCCCTGGTGGGCC ACAGCCAGTCTCAGATGGTGGCTTCGGCTTCAGAGAACAACGCCAAGAACCGCTACAGAAATGTGCTGCC CTATGACTGGTCCCGGGTGCCCCTGAAGCCCATCCATGAGGAGCCAGGCTCTGACTACATCAATGCCAGC TTCATGCCCGGTCTCTGGAGCCCCCAGGAGTTCATTGCAACCCAGGGTCCCCTGCCACAGACAGTGGGTG ACTTCTGGCGCCTGGTGTGGGAACAGCAGAGCCACACCCTGGTCATGCTGACCAACTGCATGGAGGCCGG CCGGGTGAAGTGTGAGCATTACTGGCCTCTGGACTCGCAGCCCTGCACCCATGGGCACCTGCGGGTAACC CTGGTAGGTGAGGAAGTGATGGAGAACTGGACGGTGCGGGAACTGCTGCTCCTCCAGGTGGAGGAGCAGA AGACACTGTCTGTGCGCCAATTCCACTACCAGGCCTGGCCGGATCACGGCGTTCCCTCCTCCCCAGACAC CTTGCTGGCTTTCTGGAGGATGCTTCGGCAGTGGCTGGATCAGACCATGGAGGGAGGCCCACCCATTGTG CACTGCAGTGCTGGCGTGGGTCGCACAGGAACCCTCATTGCCCTGGACGTCCTGCTCCGGCAGCTGCAGT CCGAGGGTCTCCTTGGGCCCTTCAGCTTTGTAAGGAAGATGAGAGAGAGTCGGCCGTTGATGGTGCAGAC TGAGGCTCAGTACGTATTCCTGCATCAGTGCATCCTGCGGTTCCTCCAACAGTCAGCCCAGGCCCCAGCC GAGAAGGAAGTCCCGTATGAGGATGTCGAAAACCTCATCTACGAGAACGTGGCCGCCATCCAGGCCCACA AGTTGGAGGTCTAA
Translation (937 aa):
MAGAGGGLGVWGNLVLLGLCSWTGARAPAPNPGRNLTVETQTTSSISLSWEVPDGLDSQNSNYWVQCTGD GGTTETRNTTATNVTVDGLGPGSLYTCSVWVEKDGVNSSVGTVTTATAPNPVRNLTVEAQTNSSIALTWE VPDGPDPQNSTYGVEYTGDGGRAGTRSTAHTNITVDRLEPGCLYVFSVWVGKNGINSSRETRNATTAPNP VRNLHMETQTNSSIALCWEVPDGPYPQDYTYWVEYTGDGGGTETRNTTNTSVTAERLEPGTLYTFSVWAE KNGARGSRQNVSISTVPNAVTSLSKQDWTNSTIALRWTAPQGPGQSSYSYWVSWVREGMTDPRTQSTSGT DITLKELEAGSLYHLTVWAERNEVRGYNSTLTAATAPNEVTDLQNETQTKNSVMLWWKAPGDPHSQLYVY WVQWASKGHPRRGQDPQANWVNQTSRTNETWYKVEALEPGTLYNFTVWAERNDVASSTQSLCASTYPDTV TITSCVSTSAGYGVNLIWSCPQGGYEAFELEVGGQRGSQDRSSCGEAVSVLGLGPARSYPATITTIWDGM KVVSHSVVCHTESAGVIAGAFVGILLFLILVGLLIFFLKRRNKKKQQKPELRDLVFSSPGDIPAEDFADH VRKNERDSNCGFADEYQQLSLVGHSQSQMVASASENNAKNRYRNVLPYDWSRVPLKPIHEEPGSDYINAS FMPGLWSPQEFIATQGPLPQTVGDFWRLVWEQQSHTLVMLTNCMEAGRVKCEHYWPLDSQPCTHGHLRVT LVGEEVMENWTVRELLLLQVEEQKTLSVRQFHYQAWPDHGVPSSPDTLLAFWRMLRQWLDQTMEGGPPIV HCSAGVGRTGTLIALDVLLRQLQSEGLLGPFSFVRKMRESRPLMVQTEAQYVFLHQCILRFLQQSAQAPA EKEVPYEDVENLIYENVAAIQAHKLEV

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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