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Report for CCDS55633.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55633.1 Public Homo sapiens 1 HORMAD1 24 110 108 CCDS HistoryNCBI Gene:84072Re-query CCDS DB by CCDS ID:55633.1Re-query CCDS DB by GeneID:84072See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55633.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322343.11 ENSP00000326489.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000322343.11Link to Ensembl Protein Viewer:ENSP00000326489.7Re-query CCDS DB by Nucleotide ID:ENST00000322343Re-query CCDS DB by Protein ID:ENSP00000326489
Original member Current member NCBI NM_001199829.2 NP_001186758.1 Accepted alive Link to Nucleotide Sequence:NM_001199829.2Link to Protein Sequence:NP_001186758.1Re-query CCDS DB by Nucleotide ID:NM_001199829Re-query CCDS DB by Protein ID:NP_001186758Link to BLAST:NP_001186758.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186758.1 387 Q86X24-2 387 100% 0 0

Chromosomal Locations for CCDS 55633.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 150698654 150698734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150700112 150700183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150703310 150703393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150704118 150704194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150704277 150704343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150706553 150706809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150708256 150708407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150708894 150708961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150711545 150711571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150714085 150714121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150714615 150714678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150717138 150717282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150719473 150719505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGGCCACTGCCCAGTTGCAGAGGACTCCCATGAGTGCACTGGTATTTCCCAATAAGATATCAACTGAAC
ACCAGTCTTTGGTGTTAGTGAAGAGGCTTCTAGCAGTTTCAGTATCCTGTATCACGTATTTGAGGGGAAT
ATTCCCAGAATGCGCTTATGGAACAAGATATCTAGATGATCTTTGTGTCAAAATACTGAGAGAAGATAAA
AATTGCCCAGGATCTACACAGTTAGTGAAATGGATGCTAGGATGTTATGATGCTTTACAGAAAAAATATG
TATACACAAACCCAGAAGATCCTCAGACAATTTCAGAATGTTACCAATTCAAATTCAAATACACCAATAA
TGGACCACTCATGGACTTCATAAGTAAAAACCAAAGCAACGAATCTAGCATGTTGTCTACTGACACCAAG
AAAGCAAGCATTCTCCTCATTCGCAAGATTTATATCCTAATGCAAAATCTGGGGCCTTTACCTAATGATG
TTTGTTTGACCATGAAACTTTTTTACTATGATGAAGTTACACCCCCAGATTACCAGCCTCCCGGTTTTAA
GGATGGTGATTGTGAAGGAGTTATATTTGAAGGGGAACCTATGTATTTAAATGTGGGAGAAGTCTCAACA
CCTTTTCACATCTTCAAAGTAAAAGTGACCACTGAGAGAGAACGAATGGAAAATATTGACTCAACTATAC
TATCACCAAAACAAATAAAAACACCATTTCAAAAAATCCTGAGGGACAAAGATGTAGAAGATGAACAGGA
GCATTATACAAGTGATGATTTGGACATTGAAACTAAAATGGAAGAACAGGAAAAAAACCCTGCATCTTCT
GAACTTGAAGAACCAAGTTTAGTTTGTGAGGAAGATGAAATTATGAGGTCTAAAGAAAGTCCAGATCTTT
CTATTTCTCATTCTCAGGTTGAGCAGTTAGTCAATAAAACATCTGAACTTGATATGTCTGAAAGCAAAAC
AAGAAGTGGAAAAGTCTTTCAGAATAAAATGGCAAATGGAAATCAACCAGTAAAATCTTCCAAAGAAAAT
CGGAAGAGAAGTCAACATGAATCTGGGAGAATAGTCCTCCATCACTTTGATTCTTCTAGTCAAGAGTCAG
TGCCAAAAAGGAGAAAGTTTAGTGAACCAAAGGAACATATATAA

Translation (387 aa):
MATAQLQRTPMSALVFPNKISTEHQSLVLVKRLLAVSVSCITYLRGIFPECAYGTRYLDDLCVKILREDK
NCPGSTQLVKWMLGCYDALQKKYVYTNPEDPQTISECYQFKFKYTNNGPLMDFISKNQSNESSMLSTDTK
KASILLIRKIYILMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPGFKDGDCEGVIFEGEPMYLNVGEVST
PFHIFKVKVTTERERMENIDSTILSPKQIKTPFQKILRDKDVEDEQEHYTSDDLDIETKMEEQEKNPASS
ELEEPSLVCEEDEIMRSKESPDLSISHSQVEQLVNKTSELDMSESKTRSGKVFQNKMANGNQPVKSSKEN
RKRSQHESGRIVLHHFDSSSQESVPKRRKFSEPKEHI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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