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Report for CCDS55810.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55810.1 Public Homo sapiens 12 DNAI7 24 110 108 CCDS HistoryNCBI Gene:55259Re-query CCDS DB by CCDS ID:55810.1Re-query CCDS DB by GeneID:55259See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55810.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395990.6 ENSP00000379313.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395990.6Link to Ensembl Protein Viewer:ENSP00000379313.2Re-query CCDS DB by Nucleotide ID:ENST00000395990Re-query CCDS DB by Protein ID:ENSP00000379313
Original member Current member NCBI NM_001204102.3 NP_001191031.2 Accepted alive Link to Nucleotide Sequence:NM_001204102.3Link to Protein Sequence:NP_001191031.2Re-query CCDS DB by Nucleotide ID:NM_001204102Re-query CCDS DB by Protein ID:NP_001191031Link to BLAST:NP_001191031.2
Original member Current member NCBI NM_001319978.2 NP_001306907.2 Accepted alive Link to Nucleotide Sequence:NM_001319978.2Link to Protein Sequence:NP_001306907.2Re-query CCDS DB by Nucleotide ID:NM_001319978Re-query CCDS DB by Protein ID:NP_001306907Link to BLAST:NP_001306907.2
Original member Current member NCBI NM_001352061.2 NP_001338990.2 Accepted alive Link to Nucleotide Sequence:NM_001352061.2Link to Protein Sequence:NP_001338990.2Re-query CCDS DB by Nucleotide ID:NM_001352061Re-query CCDS DB by Protein ID:NP_001338990Link to BLAST:NP_001338990.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191031.2 676 Q6TDU7-2 676 100% 0 0
NP_001306907.2 676 Q6TDU7-2 676 100% 0 0
NP_001338990.2 676 Q6TDU7-2 676 100% 0 0

Chromosomal Locations for CCDS 55810.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 25108548 25108823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25110127 25110240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25111772 25111939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25114656 25114870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25119145 25119301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25121753 25121913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25123211 25123286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25144365 25144677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25147001 25147104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25149628 25149774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25154319 25154456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25155311 25155412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25158472 25158531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2031 nt):
ATGGAAAGGCTTGAAATACAGCGAATTGAGAAAGAAAAATGGCATCGACTTGAAGCAAAAGATCTAGAAA
GGAGAAATGAAGAACTTGAAGAACTTTATTTATTAGAGAGGTGTTTTCCTGAAGCAGAGAAATTGAAACA
GGAAACTAAATTGCTTTCTCAGTGGAAGCACTACATTCAATGTGATGGGAGTCCTGATCCTTCAGTAGCC
CAAGAAATGAACACGTTTATTAGTTTGTGGAAAGAGAAAACAAATGAGACTTTTGAGGAAGTGATTGAGA
AGAGTAAAGTAGTGCTAAATTTAATTGAGAAATTGAAATTTATTTTACTGGAAACTCCACCATGTGATTT
GCAAGATAAAAATATAATACAGTACCAAGAATCAATACTACAACTGCAGGAGCTCCTTCATCTTAAATTC
GGTGTAGCCACAGAAATACTTCTCAAACAAGCTAGTACTTTGGCAGATCTGGACAGTGGAAATATGGAAA
AAGTCATTAAAGATGAAAATGTTACTCTGTATGTGTGGGCAAACCTCAAGAAGAATCCAAGGCACAGAAG
TGTTAGATTCTCTGAAACACAAATTGGATTTGAGATTCCAAGGATATTAGCAACAAGTGACATTGCTGTA
CGACTCCTGCATACCCACTATGATCATGTTTCTGCACTGCACCCTGTTTCAACACCATCAAAAGAATACA
CTTCTGCAGTAACTGAGCTTGTCAAAGATGATGTTAAGAATGTAGAAAAAGCAATCAGCAAGGAGGTCGA
AGAAGAGTCCAAACAACAAGAAAGAGGGTCTCACTTAATTCAGGAGGAAGAAATAAAAGTTGAGGAGGAA
CAAGGTGATATTGAAGTGAAAATGAGTTCTGCTGAGGAAGAATCTGAAGCCATAAAATGTGAACGAGAGA
TGAAAGTATTAAGTGAAACTGTTTCAGCAGCACAGTTGTTGCTGGTAGAGAATTCTTCTGAAAAGCCAGA
TTTCTTTGAAGACAATGTGGTGGATTTATGCCAGTTCACAACTCTGGGTGGAGTATACCACTTGGATATT
TTGGAGCTTCCTCCACAGTGTAAACCAGTGAAGGGATGGATGATTGTGGAAATACTCAAAGAAGGATTAC
AGAAATACACATATCCTCCGGAAACTACAGAAGAGTTTGAGACAGAAAATGCTTTCCCACCTATAGAGGT
CACACTTGAGGTTCATGAGAATGTAATCTTTTTTGAGGATCCTGTGGTTGTAAGGTGGGATGCTGAAGGT
AAACATTGGAGAACTGATGGCATCAGCAATGTATCCTACAAACCAAAAGAAAGACTTGTAACATTCAGCC
TGGACACCTTTGGCCCTGTTACCTTGATTCAAGATGCTCATATTAACATGCCGTACCAGTCATGGGAACT
AAGACCACTTGATGTAAATAAAGTACTTTTAACTGTGACTACAGTATTTACTGAGATTCAAATACAAATT
AAGGAAAACCTCTGCATGTTATCTTCAATCAAACTAAAAGACAAGAAACACATCTCTATTTTGGAAGGAA
CCTGGATGACTCCTATTCCTTTCATTATTGCTTTGAAAGAAGCTGGACTGAATATCTTTCCTACTAGACA
CTCTCATTTTTATGTTATTATAAACAATAAGGTTCCTTTGGTAGAAGTGAAAGCTTATCGACAGATGGCC
CTACTAAGTTCTGCTTTTGCATTTGGTTGGAGCAAGTGGAACCTACTATGTAATTCTACAAAAGTCGTAT
TTAAGGTGAGGGAACACCTTACTGAAGCATGTACTGAGAATCCTAATTGGGCCCTTTTAATGTTTAGTGG
TGACAGAGCACAAAGACTGAAGATCAAGGAAGAGAGTGAGGCATTTTCTGAAGCACTTAAAGAAGAAACT
GAGTTTCATTCTACTTTATATCACATGGTGAAGGATTTTGCTTCTGAGGAAGCAATGGAGAAAGTCAGGA
GTTCCAACTGTCAGTTTGTCAACTCTGTGTGCCACATGCTGCTCTCTACCAGATTGCTCAGCTACTCCTA
A

Translation (676 aa):
MERLEIQRIEKEKWHRLEAKDLERRNEELEELYLLERCFPEAEKLKQETKLLSQWKHYIQCDGSPDPSVA
QEMNTFISLWKEKTNETFEEVIEKSKVVLNLIEKLKFILLETPPCDLQDKNIIQYQESILQLQELLHLKF
GVATEILLKQASTLADLDSGNMEKVIKDENVTLYVWANLKKNPRHRSVRFSETQIGFEIPRILATSDIAV
RLLHTHYDHVSALHPVSTPSKEYTSAVTELVKDDVKNVEKAISKEVEEESKQQERGSHLIQEEEIKVEEE
QGDIEVKMSSAEEESEAIKCEREMKVLSETVSAAQLLLVENSSEKPDFFEDNVVDLCQFTTLGGVYHLDI
LELPPQCKPVKGWMIVEILKEGLQKYTYPPETTEEFETENAFPPIEVTLEVHENVIFFEDPVVVRWDAEG
KHWRTDGISNVSYKPKERLVTFSLDTFGPVTLIQDAHINMPYQSWELRPLDVNKVLLTVTTVFTEIQIQI
KENLCMLSSIKLKDKKHISILEGTWMTPIPFIIALKEAGLNIFPTRHSHFYVIINNKVPLVEVKAYRQMA
LLSSAFAFGWSKWNLLCNSTKVVFKVREHLTEACTENPNWALLMFSGDRAQRLKIKEESEAFSEALKEET
EFHSTLYHMVKDFASEEAMEKVRSSNCQFVNSVCHMLLSTRLLSYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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