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Report for CCDS46066.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46066.1 Public Homo sapiens 19 YIF1B 24 110 108 CCDS HistoryNCBI Gene:90522Re-query CCDS DB by CCDS ID:46066.1Re-query CCDS DB by GeneID:90522See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46066.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329420.12 ENSP00000329559.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000329420.12Link to Ensembl Protein Viewer:ENSP00000329559.7Re-query CCDS DB by Nucleotide ID:ENST00000329420Re-query CCDS DB by Protein ID:ENSP00000329559
Original member Current member NCBI NM_001039671.3 NP_001034760.1 Accepted alive Link to Nucleotide Sequence:NM_001039671.3Link to Protein Sequence:NP_001034760.1Re-query CCDS DB by Nucleotide ID:NM_001039671Re-query CCDS DB by Protein ID:NP_001034760Link to BLAST:NP_001034760.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034760.1 299 Q5BJH7-6 299 100% 0 0

Chromosomal Locations for CCDS 46066.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 38305352 38305507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38307428 38307521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38307597 38307752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38308792 38308849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38308979 38309057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38309224 38309328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38309405 38309643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38315717 38315729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGCCAGGTTCGGCCTCGAAGCGGAGGATCCCTGTGTCCCAGCCGGGCATGGCCGACCCCCACCAGCTTT
TCGATGACACAAGTTCAGCCCAGAGCCGGGGCTATGGGGCCCAGCGGGCACCTGGTGGCCTGAGTTATCC
TGCAGCCTCTCCCACGCCCCATGCAGCCTTCCTGGCTGACCCGGTGTCCAACATGGCCATGGCCTATGGG
AGCAGCCTGGCCGCGCAGGGCAAGGAGCTGGTGGATAAGAACATCGACCGCTTCATCCCCATCACCAAGC
TCAAGTATTACTTTGCTGTGGACACCATGTATGTGGGCAGAAAGCTGGGCCTGCTGTTCTTCCCCTACCT
ACACCAGGACTGGGAAGTGCAGTACCAACAGGACACCCCGGTGGCCCCCCGCTTTGACGTCAATGCCCCG
GACCTCTACATTCCAGCAATGGCTTTCATCACCTACGTTTTGGTGGCTGGTCTTGCGCTGGGGACCCAGG
ATAGGTTCTCCCCAGACCTCCTGGGGCTGCAAGCGAGCTCAGCCCTGGCCTGGCTGACCCTGGAGGTGCT
GGCCATCCTGCTCAGCCTCTATCTGGTCACTGTCAACACCGACCTCACCACCATCGACCTGGTGGCCTTC
TTGGGCTACAAATATGTCGGGATGATTGGCGGGGTCCTCATGGGCCTGCTCTTCGGGAAGATTGGCTACT
ACCTGGTGCTGGGCTGGTGCTGCGTAGCCATCTTTGTGTTCATGATCCGGACGCTGCGGCTGAAGATCTT
GGCAGACGCAGCAGCTGAGGGGGTCCCGGTGCGTGGGGCCCGGAACCAGCTGCGCATGTACCTGACCATG
GCGGTGGCGGCGGCGCAGCCTATGCTCATGTACTGGCTCACCTTCCACCTGGTGCGGTGA

Translation (299 aa):
MPGSASKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAASPTPHAAFLADPVSNMAMAYG
SSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAP
DLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAF
LGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMIRTLRLKILADAAAEGVPVRGARNQLRMYLTM
AVAAAQPMLMYWLTFHLVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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