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Report for CCDS45564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45564.1 Public Homo sapiens 17 SCARF1 24 110 108 CCDS HistoryNCBI Gene:8578Re-query CCDS DB by CCDS ID:45564.1Re-query CCDS DB by GeneID:8578See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45564.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000571272.5 ENSP00000458174.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000571272.5Link to Ensembl Protein Viewer:ENSP00000458174.1Re-query CCDS DB by Nucleotide ID:ENST00000571272Re-query CCDS DB by Protein ID:ENSP00000458174
Original member Current member NCBI NM_145350.3 NP_663325.1 Accepted alive Link to Nucleotide Sequence:NM_145350.3Link to Protein Sequence:NP_663325.1Re-query CCDS DB by Nucleotide ID:NM_145350Re-query CCDS DB by Protein ID:NP_663325Link to BLAST:NP_663325.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663325.1 569 Q14162-3 569 100% 0 0

Chromosomal Locations for CCDS 45564.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 1635504 1635617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1636709 1636818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1636941 1637062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1638806 1638926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1639639 1639742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1639912 1640040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1640448 1640666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1643442 1643967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1644834 1644935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1645178 1645239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1645597 1645697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGGGGCTGGGGCTGCTGCTCCCGCTGCTGCTGCTCTGGACTCGGGGGACTCAGGGGTCCGAGCTGGACC
CCAAAGGGCAGCACGTCTGTGTGGCCAGCAGCCCCTCTGCTGAGCTGCAGTGCTGCGCAGGCTGGAGGCA
GAAGGATCAAGAATGCACCATCCCCATCTGTGAGGGGCCGGACGCCTGCCAGAAAGACGAGGTGTGTGTG
AAGCCGGGCCTCTGTCGATGCAAGCCTGGATTCTTTGGGGCCCACTGCAGCTCCCGCTGCCCGGGCCAGT
ACTGGGGCCCCGACTGCCGTGAGAGCTGCCCCTGCCACCCGCACGGCCAGTGCGAGCCAGCCACGGGCGC
GTGCCAGTGCCAGGCCGACCGCTGGGGAGCCCGCTGCGAGTTCCCGTGCGCCTGCGGCCCCCACGGGCGC
TGCGACCCCGCGACCGGCGTGTGCCACTGCGAACCCGGCTGGTGGTCGTCCACGTGCCGCCGCCCGTGCC
AGTGCAACACCGCGGCGGCGCGCTGCGAGCAGGCCACGGGCGCCTGCGTGTGCAAGCCGGGCTGGTGGGG
GCGCCGCTGCAGCTTCCGCTGCAACTGCCACGGCTCCCCGTGCGAGCAGGACTCCGGCCGCTGCGCCTGC
CGGCCGGGCTGGTGGGGTCCCGAATGCCAGCAGCAGTGCGAGTGTGTGCGGGGCCGCTGCAGCGCCGCCT
CCGGCGAGTGCACCTGCCCGCCCGGCTTCCGCGGAGCGCGCTGCGAGCTGCCCTGCCCGGCAGGCAGCCA
CGGGGTGCAGTGCGCACACAGCTGTGGCCGCTGCAAACACAATGAGCCGTGCTCTCCAGACACAGGCAGC
TGTGAGTCCTGCGAGCCGGGCTGGAACGGGACCCAGTGCCAGCAGCCCTGCCTGCCTGGCACCTTTGGCG
AGAGCTGCGAACAGCAGTGCCCTCACTGCCGACATGGGGAGGCCTGTGAGCCAGATACTGGCCACTGTCA
GCGCTGTGACCCTGGCTGGCTGGGGCCCAGGTGTGAAGACCCCTGCCCCACTGGTACCTTTGGGGAAGAC
TGTGGCTCTACCTGCCCCACCTGTGTTCAGGGGTCCTGTGATACTGTGACAGGGGACTGTGTCTGCAGTG
CCGGCTACTGGGGGCCCAGCTGCAACGCCTCCTGCCCAGCCGGTTTCCATGGAAACAACTGCTCAGTTCC
TTGTGAATGCCCAGAGGGACTCTGCCACCCTGTCTCTGGGTCCTGCCAGCCAGGCTCTGGCAGTCGGGAC
ACTGCCCTCATCGCGGGCAGCCTTGTGCCTCTGCTGCTGCTCTTCCTGGGCCTTGCCTGCTGTGCCTGCT
GCTGCTGGGCCCCCCGATCAGACCTCAAGGACAGGCCAGCGAGAGATGGAGCTACCGTGTCCAGGATGAA
GCTGCAGGTCTGGGGGACACTGACCAGCTTGGGCTCCACGCTGCCCTGCCGTTCCCTCAGCTCCCACAAG
CTACCCTGGGTGACAGCTTCATCGAGCCGCCCTCTGCCGGCTGGGCCACTGATGACTCCTTCTCATCCGA
TCCTGAGTCTGGAGAGGCAGATGAGGTTCCTGCCTACTGTGTGCCACCCCAAGAAGGGATGGTCCCTGTG
GCCCAGGCAGGGTCGTCAGAGGCCAGCCTGGCTGCAGGTGCTTTCCCGCCCCCTGAGGACGCCTCCACGC
CATTCGCCATCCCGCGCACCTCCAGCCTAG

Translation (569 aa):
MGLGLLLPLLLLWTRGTQGSELDPKGQHVCVASSPSAELQCCAGWRQKDQECTIPICEGPDACQKDEVCV
KPGLCRCKPGFFGAHCSSRCPGQYWGPDCRESCPCHPHGQCEPATGACQCQADRWGARCEFPCACGPHGR
CDPATGVCHCEPGWWSSTCRRPCQCNTAAARCEQATGACVCKPGWWGRRCSFRCNCHGSPCEQDSGRCAC
RPGWWGPECQQQCECVRGRCSAASGECTCPPGFRGARCELPCPAGSHGVQCAHSCGRCKHNEPCSPDTGS
CESCEPGWNGTQCQQPCLPGTFGESCEQQCPHCRHGEACEPDTGHCQRCDPGWLGPRCEDPCPTGTFGED
CGSTCPTCVQGSCDTVTGDCVCSAGYWGPSCNASCPAGFHGNNCSVPCECPEGLCHPVSGSCQPGSGSRD
TALIAGSLVPLLLLFLGLACCACCCWAPRSDLKDRPARDGATVSRMKLQVWGTLTSLGSTLPCRSLSSHK
LPWVTASSSRPLPAGPLMTPSHPILSLERQMRFLPTVCHPKKGWSLWPRQGRQRPAWLQVLSRPLRTPPR
HSPSRAPPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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