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Report for CCDS56190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56190.1 Public Homo sapiens 20 RAB5IF 24 110 108 CCDS HistoryNCBI Gene:55969Re-query CCDS DB by CCDS ID:56190.1Re-query CCDS DB by GeneID:55969See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56190.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373852.9 ENSP00000362958.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373852.9Link to Ensembl Protein Viewer:ENSP00000362958.5Re-query CCDS DB by Nucleotide ID:ENST00000373852Re-query CCDS DB by Protein ID:ENSP00000362958
Original member Current member NCBI NM_001199534.2 NP_001186463.1 Accepted alive Link to Nucleotide Sequence:NM_001199534.2Link to Protein Sequence:NP_001186463.1Re-query CCDS DB by Nucleotide ID:NM_001199534Re-query CCDS DB by Protein ID:NP_001186463Link to BLAST:NP_001186463.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186463.1 137 Q9BUV8-1 137 100% 0 0

Chromosomal Locations for CCDS 56190.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 36605952 36606065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36607715 36607818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36609601 36609758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36612010 36612047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGAGCGGCGGGCGGCGGAAGGAGGAGCCGCCTCAGCCGCAGCTGGCCAACGGGGCCCTCAAAGTCTCCG
TCTGGAGTAAGGTGCTGCGGAGCGACGCGGCCTGGGAGGATAAGGATGAATTTTTAGATGTGATCTACTG
GTTCCGACAGATCATTGCTGTGGTCCTGGGTGTCATTTGGGGAGTTTTGCCATTACGAGGGTTCTTGGGA
ATAGCAGGATTCTGCCTGATCAATGCAGGAGTCCTGTACCTCTACTTCAGCAATTACCTACAGATTGATG
AGGAAGAATATGGTGGCACGTGGGAGCTCACGAAGGAAGGGTTTATGACCTCTTTTGCCTTGTTCATGGT
ATGTGTAGCTGATAGTTTTACAACAGGTCATTTGGATCATCTTTTACACTGCCATCCATTATGA

Translation (137 aa):
MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLG
IAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVCVADSFTTGHLDHLLHCHPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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