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Report for CCDS11560.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11560.1 Public Homo sapiens 17 SAMD14 24 110 108 CCDS HistoryNCBI Gene:201191Re-query CCDS DB by CCDS ID:11560.1Re-query CCDS DB by GeneID:201191See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11560.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000503131.1 ENSP00000424474.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503131.1Link to Ensembl Protein Viewer:ENSP00000424474.1Re-query CCDS DB by Nucleotide ID:ENST00000503131Re-query CCDS DB by Protein ID:ENSP00000424474
Original member Current member NCBI NM_174920.4 NP_777580.1 Accepted alive Link to Nucleotide Sequence:NM_174920.4Link to Protein Sequence:NP_777580.1Re-query CCDS DB by Nucleotide ID:NM_174920Re-query CCDS DB by Protein ID:NP_777580Link to BLAST:NP_777580.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777580.1 445 Q8IZD0-2 445 100% 0 0

Chromosomal Locations for CCDS 11560.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 50112893 50113048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50113924 50114079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50114187 50114306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50114357 50114440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50115564 50115723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50115830 50115904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50116003 50116090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50117407 50117695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50118161 50118327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50124917 50124959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGCTTCTTCAAAGCTCCGAGAACCCGTGGATGAAGTTTTTGACCTGGACTTGGCTGTGCCAGAGACGG
CCAGACTGGACAGCAGTTTACACAAGGCCCGGGCCCAACTGTTGGCCAAGGGCCGGAGACACCGGCCATC
CCGCTCCAGGCTTCGGGACAGTGCCAGCTCCGCGGAGGATGGTGAAGGCTCGGATGGGCCCGGAGGCAAG
GTGACCGATGGCTGCGGGAGCCCCCTGCACCGGCTGCGCTCGCCTTTGCACTCAGGCCCGGGGTCCCCGG
CCGGGGGCTCTTTCTGCCTGGATCCTCCGGGGTTGCGGCGCAGCCTGGACGAGGACGAGCCGCCGCCCTC
GCCGCTCACACGCTACCGGCCCCTGCACAACGCTGCGTCGCACGAGGGCCTGGCCGCCGCCTCCTGCTCT
CCGCCGCGCTCCGCGCCCTCCTCCGACAGCTCCCCCAGCTTCGTGCGCCGCCACCCGCGCGCAGAGCCGC
ACAGCGAAGATGACAGCCGTGACGCCAGTCCTCCTGAGCCCGCCAGCCCCACCATCGGCCTCGATAAGAA
GACTCGCCGAAAGTTCCTGGACCTGGGGGTCACCCTGCGCCGAGCATCCACGGGCAAGAGCCGGAAGGAG
AAAGGCAGCAACCGACTGTCCATGGGCAGCAGGGAGTCAGTGGAGGGGTCCGGCAGGTCAGGGGGCTCCC
CGTTCCTGCCTTTTTCCTGGTTCACGGACAGCGGCAAGGGCTCAGCATCCTCGGGTAGCACCACCTCCCC
CACCTGCTCCCCTAAACACGAGGGCTTCAGCCCTAAGAAGTCAGCTTCCCAGGCCCAGCTCCTGGCTCAT
GCACAGGAGGCACTGAGCAACTCCTGGTGCCTAGTCCAGGACTTCGGCTCCACCCAGATAGGGATGGAAT
CCACTCTGAGTGATGACTCCACGCCCCCCAGCAGCAGCCCCAAGATCCCCAGTGGGCCCTGGCAGGAGGC
CAAATGTTCTTACCCCTACCACACGCTGTCTCAGTCTTCAGATGAGTTCCTGGATGAACCCCTCCCCCCT
GTCCACCACTGGACCAGCCAGCAGGTGGGCCAGTGGCTGCAGAGCCTCAACCTGGAACAGTATGCTGCTG
AGTTTGCTGCACGGCAGGTAGACGGGCCGCAGCTGCTGCAGCTGGACGGAAGCAAACTAAAGAGCCTGGG
GCTCAGCAACTCTCATGACCGGGCACTGGTGAAGCGCAAGTTGAAGGAGATGGCAGCAGCTGCCGAGAAG
GAGCGCAAGGCCCAGGAGAAGGCTGCGCGGCAGCGGGAGAAGCTCCGGCGCCGAGAGCAGGAGGCCAAGA
AGAGCTAG

Translation (445 aa):
MASSKLREPVDEVFDLDLAVPETARLDSSLHKARAQLLAKGRRHRPSRSRLRDSASSAEDGEGSDGPGGK
VTDGCGSPLHRLRSPLHSGPGSPAGGSFCLDPPGLRRSLDEDEPPPSPLTRYRPLHNAASHEGLAAASCS
PPRSAPSSDSSPSFVRRHPRAEPHSEDDSRDASPPEPASPTIGLDKKTRRKFLDLGVTLRRASTGKSRKE
KGSNRLSMGSRESVEGSGRSGGSPFLPFSWFTDSGKGSASSGSTTSPTCSPKHEGFSPKKSASQAQLLAH
AQEALSNSWCLVQDFGSTQIGMESTLSDDSTPPSSSPKIPSGPWQEAKCSYPYHTLSQSSDEFLDEPLPP
VHHWTSQQVGQWLQSLNLEQYAAEFAARQVDGPQLLQLDGSKLKSLGLSNSHDRALVKRKLKEMAAAAEK
ERKAQEKAARQREKLRRREQEAKKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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