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Report for CCDS41671.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41671.1 Public Homo sapiens 11 SLC25A45 24 110 108 CCDS HistoryNCBI Gene:283130Re-query CCDS DB by CCDS ID:41671.1Re-query CCDS DB by GeneID:283130See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41671.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294187.10 ENSP00000294187.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000294187.10Link to Ensembl Protein Viewer:ENSP00000294187.6Re-query CCDS DB by Nucleotide ID:ENST00000294187Re-query CCDS DB by Protein ID:ENSP00000294187
Original member Current member NCBI NM_001077241.3 NP_001070709.3 Accepted alive Link to Nucleotide Sequence:NM_001077241.3Link to Protein Sequence:NP_001070709.3Re-query CCDS DB by Nucleotide ID:NM_001077241Re-query CCDS DB by Protein ID:NP_001070709Link to BLAST:NP_001070709.3
Original member Current member NCBI NM_001278251.3 NP_001265180.3 Accepted alive Link to Nucleotide Sequence:NM_001278251.3Link to Protein Sequence:NP_001265180.3Re-query CCDS DB by Nucleotide ID:NM_001278251Re-query CCDS DB by Protein ID:NP_001265180Link to BLAST:NP_001265180.3
Original member Current member NCBI NM_001352382.2 NP_001339311.2 Accepted alive Link to Nucleotide Sequence:NM_001352382.2Link to Protein Sequence:NP_001339311.2Re-query CCDS DB by Nucleotide ID:NM_001352382Re-query CCDS DB by Protein ID:NP_001339311Link to BLAST:NP_001339311.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070709.3 246 Q8N413-2 246 100% 0 0
NP_001265180.3 246 Q8N413-2 246 100% 0 0
NP_001339311.2 246 Q8N413-2 246 100% 0 0

Chromosomal Locations for CCDS 41671.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 65376407 65376675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65376818 65377076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65379376 65379561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65379867 65379893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGGTCAAGATTTACCGCCATGAGTCCCTCCTGGGCTTCTTCAAGGGAATGAGCTTCCCCATTGCCAGCA
TAGCTGTGGTCAACTCTGTCCTGTTTGGGGTCTATAGCAACACCCTGCTGGTGCTCACGGCCACCTCCCA
CCAGGAGCGGCGGGCCCAGCCGCCCAGCTACATGCACATCTTCCTAGCGGGCTGCACCGGGGGGTTCCTG
CAGGCCTACTGTCTGGCTCCTTTTGACCTCATCAAAGTCCGGCTACAAAACCAGACAGAGCCAAGGGCCC
AGCCAGGGAGCCCCCCACCCCGGTACCAGGGGCCCGTGCACTGTGCAGCCTCCATCTTCCGGGAGGAGGG
GCCCCGGGGGCTGTTCCGAGGAGCCTGGGCCCTGACGCTGAGGGACACCCCCACGGTGGGGATCTACTTC
ATCACCTATGAAGGGCTCTGTCGCCAGTACACACCAGAAGGCCAGAATCCCAGCTCAGCCACGGTGCTGG
TGGCAGGGGGCTTTGCAGGCATTGCTTCCTGGGTGGCAGCCACGCCCTTAGACATGATCAAGTCCCGGAT
GCAGATGGATGGACTGAGACGCAGAGTGTACCAGGGGATGCTGGACTGCATGGTGAGCAGCATCCGGCAG
GAAGGACTGGGAGTCTTCTTCCGGGGGGTCACCATCAACAGTGCCCGCGCCTTTCCCGTCAATGCTGTCA
CCTTCCTCAGCTACGAATATCTCCTCCGCTGGTGGGGATGA

Translation (246 aa):
MVKIYRHESLLGFFKGMSFPIASIAVVNSVLFGVYSNTLLVLTATSHQERRAQPPSYMHIFLAGCTGGFL
QAYCLAPFDLIKVRLQNQTEPRAQPGSPPPRYQGPVHCAASIFREEGPRGLFRGAWALTLRDTPTVGIYF
ITYEGLCRQYTPEGQNPSSATVLVAGGFAGIASWVAATPLDMIKSRMQMDGLRRRVYQGMLDCMVSSIRQ
EGLGVFFRGVTINSARAFPVNAVTFLSYEYLLRWWG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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