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Report for CCDS35453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35453.1 Public Homo sapiens X FAM3A 24 110 108 CCDS HistoryNCBI Gene:60343Re-query CCDS DB by CCDS ID:35453.1Re-query CCDS DB by GeneID:60343See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35453.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359889.9 ENSP00000352955.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359889.9Link to Ensembl Protein Viewer:ENSP00000352955.5Re-query CCDS DB by Nucleotide ID:ENST00000359889Re-query CCDS DB by Protein ID:ENSP00000352955
Original member Current member EBI ENST00000369643.5 ENSP00000358657.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369643.5Link to Ensembl Protein Viewer:ENSP00000358657.1Re-query CCDS DB by Nucleotide ID:ENST00000369643Re-query CCDS DB by Protein ID:ENSP00000358657
Original member Current member EBI ENST00000447601.7 ENSP00000416146.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000447601.7Link to Ensembl Protein Viewer:ENSP00000416146.2Re-query CCDS DB by Nucleotide ID:ENST00000447601Re-query CCDS DB by Protein ID:ENSP00000416146
Original member Current member NCBI NM_001171132.3 NP_001164603.1 Accepted alive Link to Nucleotide Sequence:NM_001171132.3Link to Protein Sequence:NP_001164603.1Re-query CCDS DB by Nucleotide ID:NM_001171132Re-query CCDS DB by Protein ID:NP_001164603Link to BLAST:NP_001164603.1
Original member Current member NCBI NM_001282312.2 NP_001269241.1 Accepted alive Link to Nucleotide Sequence:NM_001282312.2Link to Protein Sequence:NP_001269241.1Re-query CCDS DB by Nucleotide ID:NM_001282312Re-query CCDS DB by Protein ID:NP_001269241Link to BLAST:NP_001269241.1
Original member Current member NCBI NM_021806.4 NP_068578.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021806.4Link to Protein Sequence:NP_068578.2Re-query CCDS DB by Nucleotide ID:NM_021806Re-query CCDS DB by Protein ID:NP_068578Link to BLAST:NP_068578.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164603.1 230 P98173-1 230 100% 0 0
NP_001269241.1 230 P98173-1 230 100% 0 0
NP_068578.2 230 P98173-1 230 100% 0 0

Chromosomal Locations for CCDS 35453.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 154506811 154506906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 154507203 154507329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 154507406 154507490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 154507811 154507861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 154508289 154508347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 154508474 154508597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 154511848 154511871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 154512823 154512936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 154515760 154515772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGAGGTTGGCAGGCCCTCTCCGCATTGTGGTCCTAGTCGTCAGTGTGGGTGTCACATGGATCGTGGTCA
GCATCCTCCTGGGTGGGCCTGGCAGTGGCTTTCCTCGCATCCAGCAACTCTTCACCAGTCCAGAGAGCTC
GGTGACTGCAGCGCCACGGGCCAGGAAGTACAAGTGTGGCCTGCCCCAGCCGTGTCCTGAGGAGCACCTG
GCCTTCCGCGTGGTCAGCGGGGCCGCCAACGTCATTGGGCCCAAGATCTGCCTCGAGGACAAGATGCTGA
TGAGCAGCGTCAAGGACAACGTGGGCCGCGGGCTGAACATCGCCCTGGTGAACGGGGTCAGCGGCGAGCT
CATCGAGGCCCGGGCCTTTGACATGTGGGCCGGAGATGTCAACGACCTGTTGAAGTTTATTCGGCCACTG
CACGAAGGCACCCTGGTGTTCGTGGCATCCTACGACGACCCAGCCACCAAGATGAATGAAGAGACCAGAA
AGCTCTTCAGTGAGCTGGGCAGCAGGAACGCCAAGGAGCTGGCCTTCCGGGACAGCTGGGTGTTTGTCGG
GGCCAAGGGTGTGCAGAACAAGAGCCCCTTTGAGCAGCACGTGAAGAACAGTAAGCACAGCAACAAGTAC
GAAGGCTGGCCCGAGGCGCTGGAGATGGAAGGCTGTATCCCGCGGAGAAGCACGGCCAGCTAG

Translation (230 aa):
MRLAGPLRIVVLVVSVGVTWIVVSILLGGPGSGFPRIQQLFTSPESSVTAAPRARKYKCGLPQPCPEEHL
AFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVSGELIEARAFDMWAGDVNDLLKFIRPL
HEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKELAFRDSWVFVGAKGVQNKSPFEQHVKNSKHSNKY
EGWPEALEMEGCIPRRSTAS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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