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Report for CCDS56590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56590.1 Public Homo sapiens 9 ODF2 24 110 108 CCDS HistoryNCBI Gene:4957Re-query CCDS DB by CCDS ID:56590.1Re-query CCDS DB by GeneID:4957See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 56590.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372807.10 ENSP00000361893.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372807.10Link to Ensembl Protein Viewer:ENSP00000361893.5Re-query CCDS DB by Nucleotide ID:ENST00000372807Re-query CCDS DB by Protein ID:ENSP00000361893
Original member Current member NCBI NM_001242352.2 NP_001229281.1 Accepted alive Link to Nucleotide Sequence:NM_001242352.2Link to Protein Sequence:NP_001229281.1Re-query CCDS DB by Nucleotide ID:NM_001242352Re-query CCDS DB by Protein ID:NP_001229281Link to BLAST:NP_001229281.1
Original member Current member NCBI NM_001351584.2 NP_001338513.1 Accepted alive Link to Nucleotide Sequence:NM_001351584.2Link to Protein Sequence:NP_001338513.1Re-query CCDS DB by Nucleotide ID:NM_001351584Re-query CCDS DB by Protein ID:NP_001338513Link to BLAST:NP_001338513.1
Original member Current member NCBI NM_001351585.2 NP_001338514.1 Accepted alive Link to Nucleotide Sequence:NM_001351585.2Link to Protein Sequence:NP_001338514.1Re-query CCDS DB by Nucleotide ID:NM_001351585Re-query CCDS DB by Protein ID:NP_001338514Link to BLAST:NP_001338514.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229281.1 824 Q5BJF6-4 824 100% 0 0
NP_001338513.1 824 Q5BJF6-4 824 100% 0 0
NP_001338514.1 824 Q5BJF6-4 824 100% 0 0

Chromosomal Locations for CCDS 56590.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 128460559 128460666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128460942 128461067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128469183 128469353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128471308 128471468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128472913 128473042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128473610 128473741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128481580 128481651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128482816 128482887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128483938 128484054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128484701 128484886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128485365 128485474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128487890 128488025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128492426 128492536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128492701 128492805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128494510 128494668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128496041 128496141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128498413 128498575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128499001 128499126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128500067 128500255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2475 nt):
ATGAAGGACCGCTCTTCAACTCCCCCCTTACATGTTCACGTGGATGAGAACACCCCTGTCCACGTCCACA
TAAAAAAACTCCCGAAACCATCAGCGACCAGCAGCCAGAAATCTCACAAGCGAGGAATGAAAGGGGACAC
TGTGAATGTGCGGCGGAGTGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCTGCC
CGGCCTGTGGGATGCAAGTGGGAGAATCCACCTCATTGCCTGGAGATCACGCCACCATCTTCAGAAAAGC
TGGTCTCAGTGATGCGGTTAAGTGACCTCTCTACAGAAGATGATGACTCAGGTCACTGTAAAATGAACCG
TTATGATAAGAAGATTGATAGTCTAATGAATGCGGTTGGTTGTCTGAAGTCTGAGGTCAAGATGCAAAAA
GGTGAGCGCCAGATGGCCAAAAGGTTCCTGGAGGAACGGAAGGAAGAGCTGGAGGAGGTGGCCCACGAAC
TGGCTGAGACTGAGCACGAGAACACGGTGTTGAGGCACAACATCGAGCGCATGAAGGAGGAGAAGGACTT
CACCATACTTCAGAAGAAACACCTACAACAGGAGAAGGAGTGCCTCATGTCCAAGCTGGTGGAGGCGGAA
ATGGATGGGGCTGCGGCTGCCAAGCAGGTCATGGCCTTGAAGGATACCATCGGGAAGCTGAAAACAGAGA
AACAAATGACCTGCACGGACATCAACACCCTGACAAGGCAGAAGGAACTTCTCCTGCAGAAGCTGAGCAC
ATTTGAGGAGACCAACCGCACCCTCCGAGACCTCCTGAGGGAACAGCACTGCAAAGAGGATTCTGAAAGA
CTAATGGAGCAACAAGGAGCACTGCTGAAACGGCTGGCGGAGGCCGACTCAGAGAAAGCGCGCCTGCTGT
TACTGCTGCAAGACAAGGACAAGGAGGTGGAAGAGCTCCTTCAGGAAATACAATGTGAGAAGGCTCAAGC
AAAGACAGCCTCTGAGCTTTCTAAATCCATGGAGTCCATGCGTGGGCATTTGCAGGCACAGCTTCGGTCC
AAAGAGGCTGAGAACAGTCGCCTGTGCATGCAGATTAAGAATCTGGAGCGCAGCGGGAATCAGCATAAGG
CAGAAGTGGAGGCCATCATGGAGCAGCTGAAGGAGTTGAAGCAGAAGGGAGACCGAGACAAAGAGAGCTT
GAAGAAGGCCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCGAGGAGTATGCTGAGCAGCTACACGTG
CAACTCGCTGACAAGGATCTTTATGTCGCTGAAGCTTTATCCACTCTGGAATCCTGGAGGAGCCGCTACA
ACCAAGTTGTAAAAGAAAAGGGAGACCTTGAGCTGGAAATTATTGTCCTGAATGACCGGGTAACAGATCT
TGTAAACCAACAACAAACCCTGGAGGAGAAGATGCGGGAAGACCGGGATAGCCTGGTGGAGAGACTACAC
CGTCAGACTGCTGAGTATTCCGCATTCAAGCTGGAGAATGAGAGGCTGAAGGCCAGCTTTGCTCCAATGG
AGGACAAACTCAACCAGGCACACCTCGAGGTCCAGCAGCTGAAGGCCTCAGTGAAGAACTATGAGGGGAT
GATTGACAACTATAAGAGTCAGGTGATGAAGACCAGATTGGAGGCTGATGAAGTAGCTGCCCAGCTAGAA
CGCTGTGACAAAGAGAACAAGATCCTTAAAGATGAGATGAACAAAGAGATTGAGGCGGCACGAAGGCAGT
TCCAGTCTCAGCTGGCTGACCTGCAGCAGCTCCCTGACATCCTGAAGATCACGGAGGCGAAGCTGGCTGA
GTGCCAAGACCAACTGCAGGGCTATGAGCGGAAGAACATCGACCTCACAGCCATCATATCAGACCTGCGC
AGCCGGATCGAACACCAGGGGGACAAGCTGGAGATGGCGAGAGAGAAACATCAGGCTTCCCAGAAGGAAA
ATAAACAGCTGAGTCTGAAGGTGGATGAACTGGAGAGGAAACTGGAGGCGACCAGTGCCCAGAATATCGA
GTTCCTACAGGTGATTGCCAAGAGGGAGGAGGCAATCCACCAGTCCCAGCTGCGGCTGGAGGAGAAAACA
CGGGAATGTGGGACCCTGGCAAGGCAGTTGGAGAGTGCCATTGAAGATGCGAGGAGGCAGGTGGAACAAA
CCAAGGAGCACGCACTCTCCAAGGAGCGAGCAGCCCAGAACAAAATCCTGGACCTTGAGACCCAGCTGAG
CAGAACCAAAACGGAATTGAGCCAGCTGCGGCGGAGCCGTGATGATGCGGACCGCCGCTACCAGAGCCGG
CTGCAAGACCTGAAAGATCGCCTGGAGCAGTCCGAGAGCACCAACCGCAGCATGCAGAACTACGTCCAGT
TCCTCAAATCATCATACGCCAACGTGTTTGGGGATGGTCCCTATTCCACCTTCCTGACTAGCTCTCCCAT
CCGCTCCCGATCTCCTCCTGCCTGA

Translation (824 aa):
MKDRSSTPPLHVHVDENTPVHVHIKKLPKPSATSSQKSHKRGMKGDTVNVRRSVRVKTKVPWMPPGKSSA
RPVGCKWENPPHCLEITPPSSEKLVSVMRLSDLSTEDDDSGHCKMNRYDKKIDSLMNAVGCLKSEVKMQK
GERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERMKEEKDFTILQKKHLQQEKECLMSKLVEAE
MDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSER
LMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRS
KEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHV
QLADKDLYVAEALSTLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERLH
RQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLE
RCDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLR
SRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKT
RECGTLARQLESAIEDARRQVEQTKEHALSKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSR
LQDLKDRLEQSESTNRSMQNYVQFLKSSYANVFGDGPYSTFLTSSPIRSRSPPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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