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Report for CCDS9256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9256.1 Public Homo sapiens 12 CCDC92 24 110 108 CCDS HistoryNCBI Gene:80212Re-query CCDS DB by CCDS ID:9256.1Re-query CCDS DB by GeneID:80212See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9256.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000238156.8 ENSP00000238156.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000238156.8Link to Ensembl Protein Viewer:ENSP00000238156.3Re-query CCDS DB by Nucleotide ID:ENST00000238156Re-query CCDS DB by Protein ID:ENSP00000238156
Original member Current member NCBI NM_001304957.2 NP_001291886.1 Accepted alive Link to Nucleotide Sequence:NM_001304957.2Link to Protein Sequence:NP_001291886.1Re-query CCDS DB by Nucleotide ID:NM_001304957Re-query CCDS DB by Protein ID:NP_001291886Link to BLAST:NP_001291886.1
Original member Current member NCBI NM_001304958.2 NP_001291887.1 Accepted alive Link to Nucleotide Sequence:NM_001304958.2Link to Protein Sequence:NP_001291887.1Re-query CCDS DB by Nucleotide ID:NM_001304958Re-query CCDS DB by Protein ID:NP_001291887Link to BLAST:NP_001291887.1
Original member Current member NCBI NM_001304959.2 NP_001291888.1 Accepted alive Link to Nucleotide Sequence:NM_001304959.2Link to Protein Sequence:NP_001291888.1Re-query CCDS DB by Nucleotide ID:NM_001304959Re-query CCDS DB by Protein ID:NP_001291888Link to BLAST:NP_001291888.1
Original member Current member NCBI NM_001304960.2 NP_001291889.1 Accepted alive Link to Nucleotide Sequence:NM_001304960.2Link to Protein Sequence:NP_001291889.1Re-query CCDS DB by Nucleotide ID:NM_001304960Re-query CCDS DB by Protein ID:NP_001291889Link to BLAST:NP_001291889.1
Original member Current member NCBI NM_025140.3 NP_079416.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025140.3Link to Protein Sequence:NP_079416.1Re-query CCDS DB by Nucleotide ID:NM_025140Re-query CCDS DB by Protein ID:NP_079416Link to BLAST:NP_079416.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291886.1 331 Q53HC0-1 331 100% 0 0
NP_001291887.1 331 Q53HC0-1 331 100% 0 0
NP_001291888.1 331 Q53HC0-1 331 100% 0 0
NP_001291889.1 331 Q53HC0-1 331 100% 0 0
NP_079416.1 331 Q53HC0-1 331 100% 0 0

Chromosomal Locations for CCDS 9256.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 123937058 123937830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123942744 123942785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123943347 123943493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123944272 123944305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGACTTCACCACATTTCTCGAGTTACGATGAAGGTCCTCTGGATGTCAGCATGGCAGCCACAAACCTGG
AGAACCAGCTGCACAGCGCACAGAAGAACCTCCTGTTCCTTCAGCGGGAGCATGCCAGCACGCTCAAGGG
GCTGCACTCCGAGATCAGGCGGCTGCAGCAGCACTGCACAGATTTAACATATGAGCTGACAGTCAAAAGT
TCGGAACAGACAGGAGACGGGACTTCTAAAAGCAGTGAATTAAAGAAAAGATGTGAAGAGCTGGAAGCCC
AACTGAAAGTGAAAGAGAACGAAAATGCTGAGTTGTTGAAAGAACTGGAGCAGAAAAACGCGATGATCAC
AGTGCTGGAGAACACCATCAAGGAGCGAGAGAAGAAGTACCTGGAGGAGCTGAAGGCCAAGAGTCACAAG
CTGACCCTGCTGTCTAGCGAGCTGGAGCAGCGGGCCAGCACCATCGCCTACCTGACCTCCCAGCTGCACG
CCGCCAAGAAGAAGCTCATGAGCTCCAGCGGGACCTCAGATGCCAGCCCGTCAGGGAGCCCCGTGCTGGC
CAGCTACAAGCCAGCGCCCCCCAAAGACAAGCTACCCGAAACGCCTCGCCGCCGCATGAAAAAGAGCCTC
TCAGCCCCCTTGCACCCGGAATTTGAAGAGGTCTACAGATTCGGGGCAGAGAGCAGGAAACTCCTTTTGC
GGGAACCAGTGGATGCTATGCCCGACCCCACCCCATTTCTGCTGGCTAGGGAGTCCGCCGAGGTCCACCT
CATCAAAGAGAGGCCCCTCGTCATCCCCCCCATCGCCTCCGACCGAAGCGGCGAGCAGCACAGCCCGGCC
CGCGAAAAGCCGCACAAGGCCCACGTCGGGGTGGCACATCGGATCCACCACGCCACCCCGCCGCAGGCCC
AGCCCGAGGTGAAGACCCTGGCGGTCGACCAGGTGAACGGAGGCAAGGTGGTGAGGAAGCACTCAGGGAC
GGACAGAACTGTGTGA

Translation (331 aa):
MTSPHFSSYDEGPLDVSMAATNLENQLHSAQKNLLFLQREHASTLKGLHSEIRRLQQHCTDLTYELTVKS
SEQTGDGTSKSSELKKRCEELEAQLKVKENENAELLKELEQKNAMITVLENTIKEREKKYLEELKAKSHK
LTLLSSELEQRASTIAYLTSQLHAAKKKLMSSSGTSDASPSGSPVLASYKPAPPKDKLPETPRRRMKKSL
SAPLHPEFEEVYRFGAESRKLLLREPVDAMPDPTPFLLARESAEVHLIKERPLVIPPIASDRSGEQHSPA
REKPHKAHVGVAHRIHHATPPQAQPEVKTLAVDQVNGGKVVRKHSGTDRTV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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