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Report for CCDS42377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42377.1 Public Homo sapiens 17 MTNAP1 24 110 108 CCDS HistoryNCBI Gene:55028Re-query CCDS DB by CCDS ID:42377.1Re-query CCDS DB by GeneID:55028See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42377.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268942.12 ENSP00000268942.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000268942.12Link to Ensembl Protein Viewer:ENSP00000268942.8Re-query CCDS DB by Nucleotide ID:ENST00000268942Re-query CCDS DB by Protein ID:ENSP00000268942
Original member Current member EBI ENST00000577615.5 ENSP00000464132.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000577615.5Link to Ensembl Protein Viewer:ENSP00000464132.1Re-query CCDS DB by Nucleotide ID:ENST00000577615Re-query CCDS DB by Protein ID:ENSP00000464132
Original member Current member NCBI NM_001100621.3 NP_001094091.2 Accepted alive Link to Nucleotide Sequence:NM_001100621.3Link to Protein Sequence:NP_001094091.2Re-query CCDS DB by Nucleotide ID:NM_001100621Re-query CCDS DB by Protein ID:NP_001094091Link to BLAST:NP_001094091.2
Original member Current member NCBI NM_001288770.3 NP_001275699.2 Accepted alive Link to Nucleotide Sequence:NM_001288770.3Link to Protein Sequence:NP_001275699.2Re-query CCDS DB by Nucleotide ID:NM_001288770Re-query CCDS DB by Protein ID:NP_001275699Link to BLAST:NP_001275699.2
Original member Current member NCBI NM_001351265.2 NP_001338194.2 Accepted alive Link to Nucleotide Sequence:NM_001351265.2Link to Protein Sequence:NP_001338194.2Re-query CCDS DB by Nucleotide ID:NM_001351265Re-query CCDS DB by Protein ID:NP_001338194Link to BLAST:NP_001338194.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094091.2 573 Q9BSJ5-2 573 100% 0 0
NP_001275699.2 573 Q9BSJ5-2 573 100% 0 0
NP_001338194.2 573 Q9BSJ5-2 573 100% 0 0

Chromosomal Locations for CCDS 42377.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 73235483 73236995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73242896 73243003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73247241 73247341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1722 nt):
ATGAGTGATAATCCACCCAGAATGGAAGTGTGTCCTTACTGTAAGAAGCCATTTAAACGATTAAAATCCC
ACTTGCCATACTGTAAGATGATAGGACCAACCATACCTACTGATCAAAAAGTTTATCAGTCCAAGCCAGC
TACACTCCCACGTGCTAAAAAGATGAAAGGACCAATCAAAGATTTAATTAAAGCTAAAGGGAAAGAGTTA
GAGACAGAGAATGAAGAAAGAAATTCTAAGTTGGTGGTGGACAAACCAGAACAGACAGTGAAGACCTTTC
CACTGCCAGCTGTTGGTTTGGAAAGAGCAGCTACTACAAAGGCAGATAAAGACATCAAGAATCCAATCCA
ACCATCCTTCAAAATGTTAAAAAATACTAAACCAATGACTACTTTCCAAGAAGAAACCAAGGCTCAGTTT
TACGCATCAGAGAAAACCTCTCCTAAAAGAGAACTTGCCAAAGATTTGCCTAAATCAGGAGAAAGTCGAT
GTAATCCTTCAGAAGCTGGAGCGTCTTTACTGGTTGGCTCAATAGAACCTTCTTTGTCAAATCAAGATAG
AAAATATTCCTCAACTCTACCTAATGATGTACAAACTACCTCTGGTGATCTCAAATTGGACAAAATTGAT
CCCCAAAGACAGGAACTTCTAGTAAAATTACTAGATGTGCCTACTGGTGATTGTCATATTTCTCCAAAGA
ATGTCAGTGATGGGGTTAAAAGGGTAAGAACATTATTAAGCAATGAGAGAGATTCCAAAGGCAGGGATCA
CCTCTCAGGAGTCCCTACTGATGTTACAGTTACTGAGACTCCAGAAAAGAACACAGAATCCCTCATTTTA
AGCCTTAAAATGAGCTCATTAGGTAAAATCCAAGTCATGGAGAAACAAGAGAAAGGACTTACCCTGGGAG
TAGAGACGTGTGGGAGCAAAGGAAATGCAGAGAAAAGTATGTCTGCAACAGAAAAGCAGGAACGGACTGT
CATGAGCCATGGCTGTGAGAACTTCAACACCAGGGATTCAGTCACAGGAAAGGAGTCTCAAGGGGAAAGA
CCACATTTAAGTTTGTTCATTCCGAGGGAGACGACTTACCAGTTTCATTCTGTATCGCAGTCAAGTAGTC
AAAGTCTTGCCTCTCTAGCTACAACATTTCTTCAAGAAAAGAAAGCAGAAGCCCAGAATCATCATTGTGT
CCCTGATGTAAAGGCATTAATGGAGAGTCCCGAGGGACAGTTATCTCTGGAGCCCAAATCTGATAGTCAG
TTCCAAGCATCACACACTGGGTGCCAGAGCCCTTTATGTTCAGCCCAGCGTCACACTCCTCAGAGCCCCT
TCACCAATCATGCTGCAGCTGCTGGCAGGAAGACTCTTCGCAGCTGCATGGGGCTGGAGTGGTTTCCAGA
GCTCTATCCTGGTTACCTTGGACTAGGGGTGTTGCCAGGGAAGCCTCAGTGTTGGAATGCAATGACCCAG
AAGCCACAACTTATCAGTCCCCAGGGGGAAAGACTCTCACAAGGCTGGATCAGGTGCAACACCACCATAA
GGAAGAGTGGATTCGGTGGCATCACGATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTGGAGTTT
CAGACGTCTGAAAAAATTGTGCCGACCCCTGCCCTGGAAGAGCACAGTACCTCCATGCATTGGTGTGGCG
AAGACGACTGGGGATTGCCGCTCTAAAACATGTTTGGATTAG

Translation (573 aa):
MSDNPPRMEVCPYCKKPFKRLKSHLPYCKMIGPTIPTDQKVYQSKPATLPRAKKMKGPIKDLIKAKGKEL
ETENEERNSKLVVDKPEQTVKTFPLPAVGLERAATTKADKDIKNPIQPSFKMLKNTKPMTTFQEETKAQF
YASEKTSPKRELAKDLPKSGESRCNPSEAGASLLVGSIEPSLSNQDRKYSSTLPNDVQTTSGDLKLDKID
PQRQELLVKLLDVPTGDCHISPKNVSDGVKRVRTLLSNERDSKGRDHLSGVPTDVTVTETPEKNTESLIL
SLKMSSLGKIQVMEKQEKGLTLGVETCGSKGNAEKSMSATEKQERTVMSHGCENFNTRDSVTGKESQGER
PHLSLFIPRETTYQFHSVSQSSSQSLASLATTFLQEKKAEAQNHHCVPDVKALMESPEGQLSLEPKSDSQ
FQASHTGCQSPLCSAQRHTPQSPFTNHAAAAGRKTLRSCMGLEWFPELYPGYLGLGVLPGKPQCWNAMTQ
KPQLISPQGERLSQGWIRCNTTIRKSGFGGITMLFTGYFVLCCSWSFRRLKKLCRPLPWKSTVPPCIGVA
KTTGDCRSKTCLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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