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Report for CCDS2343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2343.1 Public Homo sapiens 2 CASP8 24 110 108 CCDS HistoryNCBI Gene:841Re-query CCDS DB by CCDS ID:2343.1Re-query CCDS DB by GeneID:841See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2343.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323492.11 ENSP00000325722.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000323492.11Link to Ensembl Protein Viewer:ENSP00000325722.7Re-query CCDS DB by Nucleotide ID:ENST00000323492Re-query CCDS DB by Protein ID:ENSP00000325722
Original member Current member EBI ENST00000392263.6 ENSP00000376091.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392263.6Link to Ensembl Protein Viewer:ENSP00000376091.2Re-query CCDS DB by Nucleotide ID:ENST00000392263Re-query CCDS DB by Protein ID:ENSP00000376091
Original member Current member EBI ENST00000696087.1 ENSP00000512382.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696087.1Link to Ensembl Protein Viewer:ENSP00000512382.1Re-query CCDS DB by Nucleotide ID:ENST00000696087Re-query CCDS DB by Protein ID:ENSP00000512382
Original member Current member NCBI NM_001080124.2 NP_001073593.1 Accepted alive Link to Nucleotide Sequence:NM_001080124.2Link to Protein Sequence:NP_001073593.1Re-query CCDS DB by Nucleotide ID:NM_001080124Re-query CCDS DB by Protein ID:NP_001073593Link to BLAST:NP_001073593.1
Original member Current member NCBI NM_001400658.1 NP_001387587.1 Accepted alive Link to Nucleotide Sequence:NM_001400658.1Link to Protein Sequence:NP_001387587.1Re-query CCDS DB by Nucleotide ID:NM_001400658Re-query CCDS DB by Protein ID:NP_001387587Link to BLAST:NP_001387587.1
Original member Current member NCBI NM_001400659.1 NP_001387588.1 Accepted alive Link to Nucleotide Sequence:NM_001400659.1Link to Protein Sequence:NP_001387588.1Re-query CCDS DB by Nucleotide ID:NM_001400659Re-query CCDS DB by Protein ID:NP_001387588Link to BLAST:NP_001387588.1
Original member Current member NCBI NM_001400660.1 NP_001387589.1 Accepted alive Link to Nucleotide Sequence:NM_001400660.1Link to Protein Sequence:NP_001387589.1Re-query CCDS DB by Nucleotide ID:NM_001400660Re-query CCDS DB by Protein ID:NP_001387589Link to BLAST:NP_001387589.1
Original member Current member NCBI NM_001400661.1 NP_001387590.1 Accepted alive Link to Nucleotide Sequence:NM_001400661.1Link to Protein Sequence:NP_001387590.1Re-query CCDS DB by Nucleotide ID:NM_001400661Re-query CCDS DB by Protein ID:NP_001387590Link to BLAST:NP_001387590.1
Original member Current member NCBI NM_001400662.1 NP_001387591.1 Accepted alive Link to Nucleotide Sequence:NM_001400662.1Link to Protein Sequence:NP_001387591.1Re-query CCDS DB by Nucleotide ID:NM_001400662Re-query CCDS DB by Protein ID:NP_001387591Link to BLAST:NP_001387591.1
Original member Current member NCBI NM_001400663.1 NP_001387592.1 Accepted alive Link to Nucleotide Sequence:NM_001400663.1Link to Protein Sequence:NP_001387592.1Re-query CCDS DB by Nucleotide ID:NM_001400663Re-query CCDS DB by Protein ID:NP_001387592Link to BLAST:NP_001387592.1
Original member Current member NCBI NM_033356.4 NP_203520.1 Accepted alive Link to Nucleotide Sequence:NM_033356.4Link to Protein Sequence:NP_203520.1Re-query CCDS DB by Nucleotide ID:NM_033356Re-query CCDS DB by Protein ID:NP_203520Link to BLAST:NP_203520.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073593.1 464 Q14790-2 464 100% 0 0
NP_001387587.1 464 Q14790-2 464 100% 0 0
NP_001387588.1 464 Q14790-2 464 100% 0 0
NP_001387589.1 464 Q14790-2 464 100% 0 0
NP_001387590.1 464 Q14790-2 464 100% 0 0
NP_001387591.1 464 Q14790-2 464 100% 0 0
NP_001387592.1 464 Q14790-2 464 100% 0 0
NP_203520.1 464 Q14790-2 464 100% 0 0

Chromosomal Locations for CCDS 2343.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 201266487 201266791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201271516 201271621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201272638 201272776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201274889 201274953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201276827 201276968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201284816 201285317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201286459 201286594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGGACTTCAGCAGAAATCTTTATGATATTGGGGAACAACTGGACAGTGAAGATCTGGCCTCCCTCAAGT
TCCTGAGCCTGGACTACATTCCGCAAAGGAAGCAAGAACCCATCAAGGATGCCTTGATGTTATTCCAGAG
ACTCCAGGAAAAGAGAATGTTGGAGGAAAGCAATCTGTCCTTCCTGAAGGAGCTGCTCTTCCGAATTAAT
AGACTGGATTTGCTGATTACCTACCTAAACACTAGAAAGGAGGAGATGGAAAGGGAACTTCAGACACCAG
GCAGGGCTCAAATTTCTGCCTACAGGGTCATGCTCTATCAGATTTCAGAAGAAGTGAGCAGATCAGAATT
GAGGTCTTTTAAGTTTCTTTTGCAAGAGGAAATCTCCAAATGCAAACTGGATGATGACATGAACCTGCTG
GATATTTTCATAGAGATGGAGAAGAGGGTCATCCTGGGAGAAGGAAAGTTGGACATCCTGAAAAGAGTCT
GTGCCCAAATCAACAAGAGCCTGCTGAAGATAATCAACGACTATGAAGAATTCAGCAAAGGGGAGGAGTT
GTGTGGGGTAATGACAATCTCGGACTCTCCAAGAGAACAGGATAGTGAATCACAGACTTTGGACAAAGTT
TACCAAATGAAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCACAATTTTGCAAAAGCACGGG
AGAAAGTGCCCAAACTTCACAGCATTAGGGACAGGAATGGAACACACTTGGATGCAGGGGCTTTGACCAC
GACCTTTGAAGAGCTTCATTTTGAGATCAAGCCCCACGATGACTGCACAGTAGAGCAAATCTATGAGATT
TTGAAAATCTACCAACTCATGGACCACAGTAACATGGACTGCTTCATCTGCTGTATCCTCTCCCATGGAG
ACAAGGGCATCATCTATGGCACTGATGGACAGGAGGCCCCCATCTATGAGCTGACATCTCAGTTCACTGG
TTTGAAGTGCCCTTCCCTTGCTGGAAAACCCAAAGTGTTTTTTATTCAGGCTTGTCAGGGGGATAACTAC
CAGAAAGGTATACCTGTTGAGACTGATTCAGAGGAGCAACCCTATTTAGAAATGGATTTATCATCACCTC
AAACGAGATATATCCCGGATGAGGCTGACTTTCTGCTGGGGATGGCCACTGTGAATAACTGTGTTTCCTA
CCGAAACCCTGCAGAGGGAACCTGGTACATCCAGTCACTTTGCCAGAGCCTGAGAGAGCGATGTCCTCGA
GGCGATGATATTCTCACCATCCTGACTGAAGTGAACTATGAAGTAAGCAACAAGGATGACAAGAAAAACA
TGGGGAAACAGATGCCTCAGCCTACTTTCACACTAAGAAAAAAACTTGTCTTCCCTTCTGATTGA

Translation (464 aa):
MDFSRNLYDIGEQLDSEDLASLKFLSLDYIPQRKQEPIKDALMLFQRLQEKRMLEESNLSFLKELLFRIN
RLDLLITYLNTRKEEMERELQTPGRAQISAYRVMLYQISEEVSRSELRSFKFLLQEEISKCKLDDDMNLL
DIFIEMEKRVILGEGKLDILKRVCAQINKSLLKIINDYEEFSKGEELCGVMTISDSPREQDSESQTLDKV
YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEI
LKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNY
QKGIPVETDSEEQPYLEMDLSSPQTRYIPDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERCPR
GDDILTILTEVNYEVSNKDDKKNMGKQMPQPTFTLRKKLVFPSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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