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Report for CCDS8376.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8376.2 Public Homo sapiens 11 APOA5 24 110 108 CCDS HistoryNCBI Gene:116519Re-query CCDS DB by CCDS ID:8376.2Re-query CCDS DB by GeneID:116519See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8376.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000227665.9 ENSP00000227665.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000227665.9Link to Ensembl Protein Viewer:ENSP00000227665.4Re-query CCDS DB by Nucleotide ID:ENST00000227665Re-query CCDS DB by Protein ID:ENSP00000227665
Original member Current member EBI ENST00000433069.2 ENSP00000399701.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000433069.2Link to Ensembl Protein Viewer:ENSP00000399701.2Re-query CCDS DB by Nucleotide ID:ENST00000433069Re-query CCDS DB by Protein ID:ENSP00000399701
Original member Current member EBI ENST00000542499.5 ENSP00000445002.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542499.5Link to Ensembl Protein Viewer:ENSP00000445002.1Re-query CCDS DB by Nucleotide ID:ENST00000542499Re-query CCDS DB by Protein ID:ENSP00000445002
Original member Current member NCBI NM_001166598.2 NP_001160070.1 Accepted alive Link to Nucleotide Sequence:NM_001166598.2Link to Protein Sequence:NP_001160070.1Re-query CCDS DB by Nucleotide ID:NM_001166598Re-query CCDS DB by Protein ID:NP_001160070Link to BLAST:NP_001160070.1
Original member Current member NCBI NM_001371904.1 NP_001358833.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001371904.1Link to Protein Sequence:NP_001358833.1Re-query CCDS DB by Nucleotide ID:NM_001371904Re-query CCDS DB by Protein ID:NP_001358833Link to BLAST:NP_001358833.1
Original member Current member NCBI NM_052968.5 NP_443200.2 Accepted alive Link to Nucleotide Sequence:NM_052968.5Link to Protein Sequence:NP_443200.2Re-query CCDS DB by Nucleotide ID:NM_052968Re-query CCDS DB by Protein ID:NP_443200Link to BLAST:NP_443200.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160070.1 366 Q6Q788 366 100% 0 0
NP_001358833.1 366 Q6Q788 366 100% 0 0
NP_443200.2 366 Q6Q788 366 100% 0 0

Chromosomal Locations for CCDS 8376.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116790128 116791067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116791586 116791697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116791812 116791860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGGCAAGCATGGCTGCCGTGCTCACCTGGGCTCTGGCTCTTCTTTCAGCGTTTTCGGCCACCCAGGCAC
GG
AAAGGCTTCTGGGACTACTTCAGCCAGACCAGCGGGGACAAAGGCAGGGTGGAGCAGATCCATCAGCA
G
AAGATGGCTCGCGAGCCCGCGACCCTGAAAGACAGCCTTGAGCAAGACCTCAACAATATGAACAAGTTC
CTG
GAAAAGCTGAGGCCTCTGAGTGGGAGCGAGGCTCCTCGGCTCCCACAGGACCCGGTGGGCATGCGGC
GG
CAGCTGCAGGAGGAGTTGGAGGAGGTGAAGGCTCGCCTCCAGCCCTACATGGCAGAGGCGCACGAGCT
G
GTGGGCTGGAATTTGGAGGGCTTGCGGCAGCAACTGAAGCCCTACACGATGGATCTGATGGAGCAGGTG
GCC
CTGCGCGTGCAGGAGCTGCAGGAGCAGTTGCGCGTGGTGGGGGAAGACACCAAGGCCCAGTTGCTGG
GG
GGCGTGGACGAGGCTTGGGCTTTGCTGCAGGGACTGCAGAGCCGCGTGGTGCACCACACCGGCCGCTT
C
AAAGAGCTCTTCCACCCATACGCCGAGAGCCTGGTGAGCGGCATCGGGCGCCACGTGCAGGAGCTGCAC
CGC
AGTGTGGCTCCGCACGCCCCCGCCAGCCCCGCGCGCCTCAGTCGCTGCGTGCAGGTGCTCTCCCGGA
AG
CTCACGCTCAAGGCCAAGGCCCTGCACGCACGCATCCAGCAGAACCTGGACCAGCTGCGCGAAGAGCT
C
AGCAGAGCCTTTGCAGGCACTGGGACTGAGGAAGGGGCCGGCCCGGACCCCCAGATGCTCTCCGAGGAG
GTG
CGCCAGCGACTTCAGGCTTTCCGCCAGGACACCTACCTGCAGATAGCTGCCTTCACTCGCGCCATCG
AC
CAGGAGACTGAGGAGGTCCAGCAGCAGCTGGCGCCACCTCCACCAGGCCACAGTGCCTTCGCCCCAGA
G
TTTCAACAAACAGACAGTGGCAAGGTTCTGAGCAAGCTGCAGGCCCGTCTGGATGACCTGTGGGAAGAC
ATC
ACTCACAGCCTTCATGACCAGGGCCACAGCCATCTGGGGGACCCCTGA


Translation (366 aa):
MASMAAVLTWALALLSAFSATQARKGFWDYFSQTSGDKGRVEQIHQQKMAREPATLKDSLEQDLNNMNKF
L
EKLRPLSGSEAPRLPQDPVGMRRQLQEELEEVKARLQPYMAEAHELVGWNLEGLRQQLKPYTMDLMEQV
A
LRVQELQEQLRVVGEDTKAQLLGGVDEAWALLQGLQSRVVHHTGRFKELFHPYAESLVSGIGRHVQELH
R
SVAPHAPASPARLSRCVQVLSRKLTLKAKALHARIQQNLDQLREELSRAFAGTGTEEGAGPDPQMLSEE
V
RQRLQAFRQDTYLQIAAFTRAIDQETEEVQQQLAPPPPGHSAFAPEFQQTDSGKVLSKLQARLDDLWED
I
THSLHDQGHSHLGDP




Links Key
 Links to:   History report
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