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Report for CCDS2148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2148.1 Public Homo sapiens 2 GPR17 24 110 108 CCDS HistoryNCBI Gene:2840Re-query CCDS DB by CCDS ID:2148.1Re-query CCDS DB by GeneID:2840See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2148.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272644.7 ENSP00000272644.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000272644.7Link to Ensembl Protein Viewer:ENSP00000272644.3Re-query CCDS DB by Nucleotide ID:ENST00000272644Re-query CCDS DB by Protein ID:ENSP00000272644
Original member Current member EBI ENST00000393018.3 ENSP00000376741.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393018.3Link to Ensembl Protein Viewer:ENSP00000376741.3Re-query CCDS DB by Nucleotide ID:ENST00000393018Re-query CCDS DB by Protein ID:ENSP00000376741
Original member Current member EBI ENST00000544369.5 ENSP00000442982.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544369.5Link to Ensembl Protein Viewer:ENSP00000442982.1Re-query CCDS DB by Nucleotide ID:ENST00000544369Re-query CCDS DB by Protein ID:ENSP00000442982
Original member Current member NCBI NM_001161415.2 NP_001154887.1 Accepted alive Link to Nucleotide Sequence:NM_001161415.2Link to Protein Sequence:NP_001154887.1Re-query CCDS DB by Nucleotide ID:NM_001161415Re-query CCDS DB by Protein ID:NP_001154887Link to BLAST:NP_001154887.1
Original member Current member NCBI NM_005291.3 NP_005282.1 Accepted alive Link to Nucleotide Sequence:NM_005291.3Link to Protein Sequence:NP_005282.1Re-query CCDS DB by Nucleotide ID:NM_005291Re-query CCDS DB by Protein ID:NP_005282Link to BLAST:NP_005282.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154887.1 367 Q13304-1 367 100% 0 0
NP_005282.1 367 Q13304-1 367 100% 0 0

Chromosomal Locations for CCDS 2148.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 127650012 127650075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127650716 127651755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGTCCAAACGGAGTTGGTGGGCTGGATCCAGAAAGCCCCCAAGAGAGATGCTGAAACTCTCAGGCTCTG
ACTCCAGCCAAAGCATGAATGGCCTTGAAGTGGCTCCCCCAGGTCTGATCACCAACTTCTCCCTGGCCAC
GGCAGAGCAATGTGGCCAGGAGACGCCACTGGAGAACATGCTGTTCGCCTCCTTCTACCTTCTGGATTTT
ATCCTGGCTTTAGTTGGCAATACCCTGGCTCTGTGGCTTTTCATCCGAGACCACAAGTCCGGGACCCCGG
CCAACGTGTTCCTGATGCATCTGGCCGTGGCCGACTTGTCGTGCGTGCTGGTCCTGCCCACCCGCCTGGT
CTACCACTTCTCTGGGAACCACTGGCCATTTGGGGAAATCGCATGCCGTCTCACCGGCTTCCTCTTCTAC
CTCAACATGTACGCCAGCATCTACTTCCTCACCTGCATCAGCGCCGACCGTTTCCTGGCCATTGTGCACC
CGGTCAAGTCCCTCAAGCTCCGCAGGCCCCTCTACGCACACCTGGCCTGTGCCTTCCTGTGGGTGGTGGT
GGCTGTGGCCATGGCCCCGCTGCTGGTGAGCCCACAGACCGTGCAGACCAACCACACGGTGGTCTGCCTG
CAGCTGTACCGGGAGAAGGCCTCCCACCATGCCCTGGTGTCCCTGGCAGTGGCCTTCACCTTCCCGTTCA
TCACCACGGTCACCTGCTACCTGCTGATCATCCGCAGCCTGCGGCAGGGCCTGCGTGTGGAGAAGCGCCT
CAAGACCAAGGCAGTGCGCATGATCGCCATAGTGCTGGCCATCTTCCTGGTCTGCTTCGTGCCCTACCAC
GTCAACCGCTCCGTCTACGTGCTGCACTACCGCAGCCATGGGGCCTCCTGCGCCACCCAGCGCATCCTGG
CCCTGGCAAACCGCATCACCTCCTGCCTCACCAGCCTCAACGGGGCACTCGACCCCATCATGTATTTCTT
CGTGGCTGAGAAGTTCCGCCACGCCCTGTGCAACTTGCTCTGTGGCAAAAGGCTCAAGGGCCCGCCCCCC
AGCTTCGAAGGGAAAACCAACGAGAGCTCGCTGAGTGCCAAGTCAGAGCTGTGA

Translation (367 aa):
MSKRSWWAGSRKPPREMLKLSGSDSSQSMNGLEVAPPGLITNFSLATAEQCGQETPLENMLFASFYLLDF
ILALVGNTLALWLFIRDHKSGTPANVFLMHLAVADLSCVLVLPTRLVYHFSGNHWPFGEIACRLTGFLFY
LNMYASIYFLTCISADRFLAIVHPVKSLKLRRPLYAHLACAFLWVVVAVAMAPLLVSPQTVQTNHTVVCL
QLYREKASHHALVSLAVAFTFPFITTVTCYLLIIRSLRQGLRVEKRLKTKAVRMIAIVLAIFLVCFVPYH
VNRSVYVLHYRSHGASCATQRILALANRITSCLTSLNGALDPIMYFFVAEKFRHALCNLLCGKRLKGPPP
SFEGKTNESSLSAKSEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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