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Report for CCDS77183.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77183.1 Public Homo sapiens 18 ST8SIA5 24 110 108 CCDS HistoryNCBI Gene:29906Re-query CCDS DB by CCDS ID:77183.1Re-query CCDS DB by GeneID:29906See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77183.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000536490.1 ENSP00000443683.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536490.1Link to Ensembl Protein Viewer:ENSP00000443683.1Re-query CCDS DB by Nucleotide ID:ENST00000536490Re-query CCDS DB by Protein ID:ENSP00000443683
Original member Current member NCBI NM_001307987.2 NP_001294916.1 Accepted alive Link to Nucleotide Sequence:NM_001307987.2Link to Protein Sequence:NP_001294916.1Re-query CCDS DB by Nucleotide ID:NM_001307987Re-query CCDS DB by Protein ID:NP_001294916Link to BLAST:NP_001294916.1

Chromosomal Locations for CCDS 77183.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 46680042 46680510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46681972 46682064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46686174 46686286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46688775 46688919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46692169 46692255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46756378 46756508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGCGCTACGCGGACCCCTCGGCCAACCGGGATTTGTTGGGGAGCCGAACTTTGCTCTTCATCTTCATCT
GCGCCTTTGCCTTGGTGACCTTGCTGCAACAGATCCTGTATGGCAGGAACTACATTAAGAGGGTGAAGCA
GTCAGAGCTGTTCGACAGGTGGAAGAGCCTCCAGATGTGCAAATGGGCGATGAACATCTCTGAGGCCAAC
CAGTTCAAGTCTACTCTGTCCAGGTGCTGCAACGCCCCTGCCTTTCTCTTCACCACCCAGAAGAACACTC
CCCTGGGGACAAAGCTCAAGTATGAGGTGGACACCAGTGGCATCTACCACATCAACCAGGAGATCTTCCG
CATGTTTCCCAAGGACATGCCCTACTACCGGTCCCAGTTTAAGAAGTGTGCTGTAGTGGGCAACGGAGGC
ATCTTGAAGAACAGCCGCTGCGGGAGGGAGATCAACAGCGCCGACTTCGTCTTCCGGTGCAACCTGCCCC
CCATCTCAGAGAAGTACACCATGGATGTGGGGGTGAAGACGGATGTGGTCACTGTGAACCCCAGCATCAT
CACAGAGAGGTTCCACAAGCTGGAGAAGTGGCGGCGGCCGTTCTATCGCGTGCTGCAGGTGTACGAGAAC
GCGTCGGTGCTGCTGCCTGCCTTCTACAACACGCGCAACACCGACGTGTCCATCCGCGTCAAGTACGTGC
TGGACGACTTCGAATCGCCGCAAGCTGTCTACTACTTCCATCCGCAGTACCTGGTCAACGTGTCGCGCTA
CTGGCTCAGCCTGGGGGTGCGCGCCAAGCGCATCAGCACCGGCCTCATTCTGGTCACTGCGGCGCTGGAG
CTCTGTGAGGAGGTGCACCTCTTTGGCTTCTGGGCCTTCCCCATGAACCCCTCGGGCCTCTACATCACTC
ACCACTACTATGACAACGTCAAGCCGCGTCCCGGCTTCCACGCCATGCCCTCTGAGATCTTCAACTTCCT
GCACTTGCACAGCCGAGGCATCCTCCGCGTGCACACGGGCACCTGCAGCTGCTGCTGA

Translation (345 aa):
MRYADPSANRDLLGSRTLLFIFICAFALVTLLQQILYGRNYIKRVKQSELFDRWKSLQMCKWAMNISEAN
QFKSTLSRCCNAPAFLFTTQKNTPLGTKLKYEVDTSGIYHINQEIFRMFPKDMPYYRSQFKKCAVVGNGG
ILKNSRCGREINSADFVFRCNLPPISEKYTMDVGVKTDVVTVNPSIITERFHKLEKWRRPFYRVLQVYEN
ASVLLPAFYNTRNTDVSIRVKYVLDDFESPQAVYYFHPQYLVNVSRYWLSLGVRAKRISTGLILVTAALE
LCEEVHLFGFWAFPMNPSGLYITHHYYDNVKPRPGFHAMPSEIFNFLHLHSRGILRVHTGTCSCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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