NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS89569.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89569.1 Public Mus musculus 2 Efcab8 23 108 98 CCDS HistoryNCBI Gene:100504221Re-query CCDS DB by CCDS ID:89569.1Re-query CCDS DB by GeneID:100504221See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 89569.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000126656.3 ENSMUSP00000135661.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126656.3Link to Ensembl Protein Viewer:ENSMUSP00000135661.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000126656Re-query CCDS DB by Protein ID:ENSMUSP00000135661
Original member Current member NCBI NM_001370916.1 NP_001357845.1 Accepted alive Link to Nucleotide Sequence:NM_001370916.1Link to Protein Sequence:NP_001357845.1Re-query CCDS DB by Nucleotide ID:NM_001370916Re-query CCDS DB by Protein ID:NP_001357845Link to BLAST:NP_001357845.1

Chromosomal Locations for CCDS 89569.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 153780913 153781079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153781764 153781815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153783641 153783806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153787634 153787752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153789156 153789259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153792708 153792843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153794367 153794472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153797643 153797727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153798556 153798680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153802368 153802441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153804887 153805017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153809828 153809895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153810206 153810357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153810872 153811006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153812624 153812734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153814379 153814606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153816368 153816438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153820295 153820499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153822534 153822713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153823739 153823885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153831380 153831598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153832116 153832274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153838866 153839034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153841118 153841250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153842891 153843086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153843156 153843254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153844092 153844526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3972 nt):
ATGCCCTCGTCCCTCCATGCTCCTCTTTCTGGAGAAGTTTCTGCCTTTTCTCTTAGTTGTCCTTACTTTC
GATGTCAAGACAGCACGGGGGAAGACCTGGGCCGGTTCCCCTCCCCACTGCCCTTTCTCATGTGCCTACT
GCTCTTCTTCCCATTTAGAGCCAGATGGCCAAGACTAATGTCTTCTGAGAAGCCAGGAGAGAGCCCCAAA
CCTCAAAAGATGGCCCAACCAGGTGGATCCCAGAAGAAGGAGACTTCCAGATCTGTTCCAGTGACAGATC
CCACCAGCCACAACAGTGAAATCAACCAAAGAGATCAGCAGTTTTCCGATATGCACCTGGCTGACCTACA
GAAGGTGTTTGAGAAGGAGGCAGACGAGAATGGAGCCCTGAAAAAGGAAGGCTTCATCAGGATCATGAAG
GGGGTGCTGAGCAGCATGTCGGAAGAGATGCTCGAGTTGCTGTTCTTGAAGGTGGACTCAGACTGCAATG
GCTTTGTCACTTGGCAGAAGTATGTGGATTATATGATGCGTGAGTTCCAGGGCAAGGAGGAGATGAGGAA
GAGCCAGTATCGCCTGCGCTTCCACCTTCCCATGACTGTCATCCCCCTGCACCATGGGAGCGAGGTTGTA
AAAGTGGCATGTTTAACCAAACGGTTCAAAAAGATGGGGCGTTTCCTGACTGTCACCAAAGATGGGATCC
TGCAGTTCTGGTCTGAGACCTTCTCAATGTTGGAATCCTTCCACCTTTCCCAGTCCAAGCAGTACGGCCA
CCAGCAGATGTGGGTTATCGACGTGGCATATCTGCACAACATGAGCCTCATTGCAGTTGCCTCCACTGAG
CTGAAGATAGAATTCTTTGATATTGGTGGCTACAAATGTATCCGGGCCTTCACCGTTATTGATCTGGATA
GCTGTGTCATGGTCATGGACTATTGGACCGACTGTCACAAAGCTGTGTTCTGCTATGGGGACACCAAGGG
CAATGCCACCATCTTCATCTCTGACAACGTGGCTGGTGGGCTGTTCAATCCACAAATCCTTCCCCGGGCC
TCCAAATGGGATCACTGGTTCACTGTTTCCCTGAAGAAGCTCTTAAATGAGAAGGCTCCTCTGTATAGAA
GCTTCCGCATGAAGGGTCTCCACCCCAACTGGTGCCAGCAGGTCAAGTACATCCCACAGCTGAATGTCGT
GGCCTCGTGTTCAGCCGTGGAGAAGTCCTCTCTGGTGCTGATAATACTGCCAGGCAAAGAACCCGAGAAA
CCCAGGTTATCATCACTGAATTTAAGAAAAGGAATTCTTTGCTTTGACTACTGTCCAGACAGGAACTTTC
TGGCAACTGGTGGCTATGACCCCCACATCCGCCTGTGGAACCCCCTGGTCTCAAAAAAGCCTGTGTGGCT
GATGAAGGGACACCAGACATCGGTGACACACCTCCTTGTGAACAGCAGGAATGCCAGCATCCTGATCAGC
ATTTCTAGGGACAAGAACATTCGAGTGTGGGATCTGCAGGATTATGTGTGCCTCCAGTCCTTCTGCGGAA
AGCTCTTTCCCCTGGGCAACTGCCCCATAACCAGCACCTACTTCTACAGGAGCAGCACCCTCATCTGTAG
CACCTACAATATTGGGATCCTCAGAGGATACCTGGAATCCCAGGGCCCCCTGAAAACAGGGAGGATGACG
ACTCACAACACACCCCTGTGTGCAGTCCTCTACAGCAAGATCTTTAAGCAGGTGGTGAGTGGCTGCCTCC
AGGGGCTAGTGAGTGTGTGGGACATCAGCACGGGCAAGAAGAGGATGGAGATACCCGTGTCCGGCATCCA
GGAAAGTGAGCTGACGGCCATGGCTCTGGACCAGTCGGAGAGGTGTCTGCTCACGGGCTTGCGTGACGGC
ACGATGCAGATGTGGAATTACAACACCGGGGAGTGCCTGATGACCTTTCCCAACCCGGACAGAGTGGAGA
TTAGTGGGATTGTCCACATGAACAAAGTGTTCTACACGACCGGGTGGAGTAAGAGAATCACCAATTTCAC
GTTCCAAAAGATCACACAGGCGCTCTCCTGCTACCACTGGCAGAGTTTCCATACAGAGGACATCCTGAGC
ATGGACAAGTATCAGAATCAGTTCCTCGGGACCTCTTCCTACAATGGGGACATTGTTTTCTGGAACGTCA
GCACGTCAAAGCCCATCTTGAGTTTCAATGCCTCCAAGAGCCCCTTGCCTTTAGAGCCAAAGAAGGTGAG
AGATAAAGAGATATGCATACCCAAGACTTCAATCCGTCTAGACTATGAAGATCAAAAGTGGGCACACAGG
CCCTGGAAGTCAGCTATCTCCACTGGGAAGCGGAGACTGATGTCAGCTCCCCCGGTGATGAAACATTGGA
AGGACGCAGAGCAACAGAGGAATATGGCTCAGGAGAAACATTTCAGGAGTCACAAACCTGGATTGTCTAA
AATGCTTGTCAATAAGTCGGGTAATAAACTGGCGTTTGATAAAGACACCCAAAAGAGAAAGGGAGACTTA
TGGAGGAAGTTGCTGTTGCAGTCCAGTGTGTCAGTGGAGAAGATCCTTTTTCTGCAGACCAGGCCCCGCC
TGCCACACACGGCTGCCTTGCTGAGCAGCTCTATTGACGGTTTCATCTACGCCTGGTCCATCCATGGGAA
CGGAGGGCTGCTGGGAAAGTTCTCCGTGGACAATGAAGTTGGTGAGAGTGTTGTGGGTGCCATGGCCACT
GATGAGAACGACTGGATCCTCCTCACGGGGGACAGTAAAGGAAATATCAAGATCTGGGACATCAAGGATT
ACTGCTACTTTATTGACCAGCAACCGCTCCAATCCAGTGGGAACTCACTCTCCGTTGACACAGAGAATAA
GTTCCGGCTCTTAATTCCTAAGCAACTCCAGGTCTGCTCCGAGCACCACTTGCCACAGGAGGAGAAGGAG
GTTGTGGAAGGACAGACCTTTTCTCTGGTTCCCCCACCACTTCTGATTACCTGGAACAGCCACCTGGACA
GCGTGACAGACATCCTGTATGTGAACTCCTTCCAGCTGGTGGTCAGTGCGGGCCAGGACCGGGATGTCAA
GGCTTGGAGACTCTCTGGTGATGCCATAGGAACATTTGGCCTGAATCTCTGGAAGAGACTGCAAGAGGCT
GCGATGGTGGATGAACTGGAGCAGGGGGCAAGTTTGGAGAAGAAGCCTGCTACAACCGGTGCCACCCTGA
AGCACTCCTTCCTAGAGATGGACAAGGAATTGGCTGAAGCCCTGGTGTACCAGCGGCGAGAGCAGGCAGT
GCTGTTAGCCTTTCTGCGTGGGAGAGCTGAGAAAGAAACTGAGGCATGGTCCAAGCTGCAGCAGATGTCC
CTCACATCTCCATGGACCAAATCGCCTTCTGTTGAAGACATCGAGGAGAGCTGGACTCGATGGACCAAGG
ACAAGCAGGCAAGCAAAATTGTGGGGGCAGCATACAAGCCCAAGGTGCGTGTTCGGAACCCCAAACTCCT
TACCTCCAGAGCTCAGTTTAACTGGATGAGACAGCAGATCTCTCCTCAGGTCTACCAATGCCTGTCCTTC
ACTGACCTTAAGCCGATCCAACAGCCCGACTTCATGATGCACAAGATCCTGGACCAAGTAGGCCGGCACA
TCCGCTGGGTGGCCAGTGATATGCGGAGTGACATGGAGGCTTTCCGGGGTCAGATCCCCACAGACATGGT
GGCCGGCTCACCTGCTGCCACACCCTCCTCCCTCTCCATGGTTTCCGTGGGACAATCACCCTCCAACTGG
TCTACCTCCCTGAAGCCCCTTTCCTCCACCTCCTTCCTCAGGCCTTCATCAGCCTCTCCGGCCCATTCTG
GTTCTTCTACGCCACCGCATATCCTGGGCCTGCCCCGAAGAGGTCAGAGACCCCAAGGCCAGATGTTATC
TCCTTCTTGCAGCACCCGAAGCCCGGGGGAGCCACCCTCGTGTCCCCTGTGA

Translation (1323 aa):
MPSSLHAPLSGEVSAFSLSCPYFRCQDSTGEDLGRFPSPLPFLMCLLLFFPFRARWPRLMSSEKPGESPK
PQKMAQPGGSQKKETSRSVPVTDPTSHNSEINQRDQQFSDMHLADLQKVFEKEADENGALKKEGFIRIMK
GVLSSMSEEMLELLFLKVDSDCNGFVTWQKYVDYMMREFQGKEEMRKSQYRLRFHLPMTVIPLHHGSEVV
KVACLTKRFKKMGRFLTVTKDGILQFWSETFSMLESFHLSQSKQYGHQQMWVIDVAYLHNMSLIAVASTE
LKIEFFDIGGYKCIRAFTVIDLDSCVMVMDYWTDCHKAVFCYGDTKGNATIFISDNVAGGLFNPQILPRA
SKWDHWFTVSLKKLLNEKAPLYRSFRMKGLHPNWCQQVKYIPQLNVVASCSAVEKSSLVLIILPGKEPEK
PRLSSLNLRKGILCFDYCPDRNFLATGGYDPHIRLWNPLVSKKPVWLMKGHQTSVTHLLVNSRNASILIS
ISRDKNIRVWDLQDYVCLQSFCGKLFPLGNCPITSTYFYRSSTLICSTYNIGILRGYLESQGPLKTGRMT
THNTPLCAVLYSKIFKQVVSGCLQGLVSVWDISTGKKRMEIPVSGIQESELTAMALDQSERCLLTGLRDG
TMQMWNYNTGECLMTFPNPDRVEISGIVHMNKVFYTTGWSKRITNFTFQKITQALSCYHWQSFHTEDILS
MDKYQNQFLGTSSYNGDIVFWNVSTSKPILSFNASKSPLPLEPKKVRDKEICIPKTSIRLDYEDQKWAHR
PWKSAISTGKRRLMSAPPVMKHWKDAEQQRNMAQEKHFRSHKPGLSKMLVNKSGNKLAFDKDTQKRKGDL
WRKLLLQSSVSVEKILFLQTRPRLPHTAALLSSSIDGFIYAWSIHGNGGLLGKFSVDNEVGESVVGAMAT
DENDWILLTGDSKGNIKIWDIKDYCYFIDQQPLQSSGNSLSVDTENKFRLLIPKQLQVCSEHHLPQEEKE
VVEGQTFSLVPPPLLITWNSHLDSVTDILYVNSFQLVVSAGQDRDVKAWRLSGDAIGTFGLNLWKRLQEA
AMVDELEQGASLEKKPATTGATLKHSFLEMDKELAEALVYQRREQAVLLAFLRGRAEKETEAWSKLQQMS
LTSPWTKSPSVEDIEESWTRWTKDKQASKIVGAAYKPKVRVRNPKLLTSRAQFNWMRQQISPQVYQCLSF
TDLKPIQQPDFMMHKILDQVGRHIRWVASDMRSDMEAFRGQIPTDMVAGSPAATPSSLSMVSVGQSPSNW
STSLKPLSSTSFLRPSSASPAHSGSSTPPHILGLPRRGQRPQGQMLSPSCSTRSPGEPPSCPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH