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Report for CCDS38830.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38830.1 Public Mus musculus 4 Ldlrad1 23 108 98 CCDS HistoryNCBI Gene:546840Re-query CCDS DB by CCDS ID:38830.1Re-query CCDS DB by GeneID:546840See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38830.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094916.4 ENSMUSP00000092521.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094916.4Link to Ensembl Protein Viewer:ENSMUSP00000092521.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094916Re-query CCDS DB by Protein ID:ENSMUSP00000092521
Original member Current member NCBI NM_001081272.2 NP_001074741.1 Accepted alive Link to Nucleotide Sequence:NM_001081272.2Link to Protein Sequence:NP_001074741.1Re-query CCDS DB by Nucleotide ID:NM_001081272Re-query CCDS DB by Protein ID:NP_001074741Link to BLAST:NP_001074741.1

Chromosomal Locations for CCDS 38830.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 107209470 107209584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107212556 107212681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107214824 107214961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107216149 107216277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107217766 107217914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGAGCGTGGGCTGTGAGAGAGCAGAATTTTGCCCAGCCTGCTTCTGGTTTCTTGGCCAGGCAGATGCCG
AGAGTAACATCACCACTAGAAGGAAAGCCCGCCCTGGAGATGAAGGCTGTGGTCCACTCTGCTGCTCACG
CCGTGGAGCCTGCCTCTCGGTCGGCCTGCTGCTCCTGCTGGCCATGCTCGCTGCCTTGCTTGCTGTGGCC
ACCATCCTCGGACATCCACCCCGCACACCAGAGACTCACTCCTGCGTGACACTAGCCAACAGGACAGGGT
TCTTGTGCCACGACCGAAGGCACTGCATCCCAGCCCATGCTGTGTGCGATGGCATCCGCACCTGTCCTCA
TGGTGAGGACGAGGCTGAGAGCCTGTGCCGAGATGTGCCCCAGAGCCTCCCCAGCTTCCTCCTGACCACC
TGTGGAGACCCAGACTCCTGGATCTACTCAGACCAGAAATGTGATGGCGTCAACAACTGTGGAGACTGCT
CAGATGAGCTGAGCCCAGTGACTACGTGCCCGCCCTGTGGCCCTGGGTGGTGGCGCTGCTCGCCAACTGT
GTTCAAGTACTGCAGCTGTGTCCCGAGGGATCTGTGCCGGGACAGCGTGCAGCACTGCTCTGACTGGTCA
GATGAGTACTCCTGTCCTGGACCCTGA

Translation (218 aa):
MSVGCERAEFCPACFWFLGQADAESNITTRRKARPGDEGCGPLCCSRRGACLSVGLLLLLAMLAALLAVA
TILGHPPRTPETHSCVTLANRTGFLCHDRRHCIPAHAVCDGIRTCPHGEDEAESLCRDVPQSLPSFLLTT
CGDPDSWIYSDQKCDGVNNCGDCSDELSPVTTCPPCGPGWWRCSPTVFKYCSCVPRDLCRDSVQHCSDWS
DEYSCPGP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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