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Report for CCDS25187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25187.1 Public Mus musculus 11 Lhx1 23 108 98 CCDS HistoryNCBI Gene:16869Re-query CCDS DB by CCDS ID:25187.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25187.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018842.13 ENSMUSP00000018842.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018842.13Link to Ensembl Protein Viewer:ENSMUSP00000018842.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000018842Re-query CCDS DB by Protein ID:ENSMUSP00000018842
Original member Current member NCBI NM_008498.3 NP_032524.1 Accepted alive Link to Nucleotide Sequence:NM_008498.3Link to Protein Sequence:NP_032524.1Re-query CCDS DB by Nucleotide ID:NM_008498Re-query CCDS DB by Protein ID:NP_032524Link to BLAST:NP_032524.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032524.1 406 P63006 406 100% 0 0

Chromosomal Locations for CCDS 25187.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 84519549 84519928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84520284 84520449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84521691 84521968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84522062 84522288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84524006 84524175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGGTGCACTGTGCGGGCTGCAAAAGGCCCATCCTGGACCGTTTCCTCTTGAACGTGTTGGACAGGGCCT
GGCACGTCAAGTGCGTCCAGTGCTGTGAATGTAAATGCAACCTGACCGAGAAGTGCTTCTCCCGGGAAGG
CAAGCTCTACTGTAAAAACGACTTCTTCCGATGTTTCGGTACCAAATGCGCCGGTTGTGCGCAGGGCATC
TCTCCAAGCGATCTGGTTCGCAGAGCGCGAAGCAAAGTGTTTCACCTCAACTGCTTCACCTGCATGATGT
GTAACAAGCAGCTCTCCACCGGCGAGGAGCTCTACATCATAGACGAGAACAAGTTCGTTTGTAAAGAGGA
TTACCTGAGTAACAGCAGTGTCGCCAAAGAGAACAGCCTCCACTCGGCCACCACAGGCAGTGACCCTAGT
TTATCTCCGGATTCCCAAGATCCATCGCAGGATGATGCCAAGGACTCTGAAAGTGCCAACGTCTCAGATA
AGGAAGGTGGTAGTAATGAGAATGATGATCAGAACCTAGGTGCCAAACGTAGGGGACCCCGGACCACGAT
CAAAGCCAAGCAACTGGAGACGTTGAAGGCAGCCTTTGCAGCTACACCCAAGCCCACACGCCATATCCGT
GAGCAACTGGCCCAGGAGACTGGCCTCAACATGCGTGTTATCCAGGTCTGGTTCCAGAATCGACGCTCCA
AGGAGCGAAGGATGAAACAGCTAAGCGCGCTAGGCGCGCGGCGCCACGCCTTTTTCCGCAGTCCTCGTCG
GATGCGGCCGCTGGTGGACCGCCTGGAGCCGGGCGAACTCATCCCCAACGGCCCCTTCTCCTTTTACGGA
GATTACCAGAGTGAGTACTACGGTCCCGGAGGCAACTACGACTTCTTCCCGCAAGGACCGCCATCCTCTC
AGGCTCAGACGCCAGTGGACCTACCCTTTGTGCCATCATCTGGCCCTTCGGGGACGCCCCTTGGAGGTCT
GGACCACCCGCTGCCTGGTCACCACCCTTCCAGTGAGGCGCAGCGATTTACTGACATCCTGGCACATCCC
CCAGGGGACTCGCCTAGTCCTGAGCCCAGCTTGCCCGGGCCTCTCCACTCCATGTCAGCGGAGGTCTTCG
GGCCCAGTCCACCTTTCTCATCTCTGTCGGTCAATGGTGGAGCCAGCTACGGGAACCATTTGTCTCACCC
TCCTGAAATGAACGAGGCAGCCGTGTGGTAG

Translation (406 aa):
MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGI
SPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPS
LSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIR
EQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYG
DYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLDHPLPGHHPSSEAQRFTDILAHP
PGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASYGNHLSHPPEMNEAAVW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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