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Report for CCDS24125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24125.1 Public Mus musculus 10 Lta4h 23 108 98 CCDS HistoryNCBI Gene:16993Re-query CCDS DB by CCDS ID:24125.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24125.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016033.8 ENSMUSP00000016033.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016033.8Link to Ensembl Protein Viewer:ENSMUSP00000016033.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000016033Re-query CCDS DB by Protein ID:ENSMUSP00000016033
Original member Current member NCBI NM_008517.2 NP_032543.2 Accepted alive Link to Nucleotide Sequence:NM_008517.2Link to Protein Sequence:NP_032543.2Re-query CCDS DB by Nucleotide ID:NM_008517Re-query CCDS DB by Protein ID:NP_032543Link to BLAST:NP_032543.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032543.2 611 P24527 611 100% 0 0

Chromosomal Locations for CCDS 24125.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 93453510 93453668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93459817 93459947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93461310 93461430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93464445 93464513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93465949 93466053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93467112 93467164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93468756 93468828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93469048 93469188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93470800 93470823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93471296 93471366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93471854 93471965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93472899 93473043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93474476 93474579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93474918 93474988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93478447 93478501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93480691 93480786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93482250 93482332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93482962 93483066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93484663 93484780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1836 nt):
ATGCCCGAGGTCGCGGATACTTGCTCCTTGGCTTCTCCAGCCTCGGTCTGCCGAACCCAGCACCTCCATC
TTCGCTGCAGCGTCGACTTCGCTCGCCGGACGCTGACCGGGACGGCCGCGCTCACGGTCCAGTCACAGGA
GGAGAATCTGCGCAGCCTGACTTTGGACACAAAAGACCTCACAATAGAAAAAGTGGTGATCAATGGACAA
GAAGTCAAATACACCCTTGGAGAAAGTCAAGGTTACAAAGGGTCACCGATGGAAATCTCTCTTCCCATCG
CCCTGAGCAAAAATCAAGAGATCGTTATAGAAATTTCCTTTGAGACATCTCCCAAATCCTCTGCGCTTCA
GTGGCTCACTCCTGAACAGACGTCAGGGAAGCAGCATCCGTATCTCTTCAGTCAGTGCCAGGCCATCCAC
TGCAGGGCCATCCTCCCTTGCCAAGACACTCCTTCCGTGAAATTAACGTACACCGCAGAGGTGTCTGTCC
CGAAAGAACTGGTGGCTCTCATGAGTGCCATCCGTGATGGAGAAGCCCCTGACCCAGAAGACCCCAGCAG
GAAGATTTACAGATTCAACCAGAGGGTTCCCATACCATGCTACCTGATTGCTTTGGTTGTTGGAGCTTTA
GAAAGCAGACAAATTGGCCCAAGAACTCTGGTGTGGTCCGAGAAAGAGCAGGTGGAGAAATCTGCTAATG
AATTTTCTGAGACCGAATCCATGCTTAAAATTGCAGAAGATCTGGGGGGGCCCTATGTTTGGGGGCAGTA
CGACCTCTTGGTTCTGCCCCCATCCTTCCCGTACGGTGGCATGGAGAACCCTTGTCTCACGTTCGTAACG
CCTACGCTACTGGCAGGTGACAAGTCACTCTCCAACGTTATTGCACATGAAATATCTCATAGCTGGACAG
GAAACCTAGTGACTAACAAGACGTGGGATCACTTTTGGTTAAACGAAGGACATACTGTCTACTTAGAGCG
CCACATTTGTGGACGGTTGTTTGGGGAAAAGTTCAGACATTTCCATGCTTTGGGAGGATGGGGAGAGCTA
CAGAATACGATAAAAACATTTGGGGAGTCCCACCCCTTCACCAAGCTCGTGGTTGATCTGAAGGACGTAG
ACCCCGATGTAGCCTATTCCTCCATCCCCTATGAGAAGGGCTTTGCGCTACTCTTCTACCTTGAACAGCT
TCTTGGGGGACCAGAGGTGTTTCTAGGATTCTTAAAGGCTTATGTTAAGAAGTTTTCCTACCAAAGTGTA
ACGACTGATGACTGGAAGAGCTTCCTATATTCCCACTTTAAAGACAAGGTGGATCTTCTCAATCAAGTTG
ATTGGAACACCTGGCTCTACGCTCCGGGCCTGCCTCCTGTCAAGCCCAATTACGACGTGACTCTGACAAA
TGCTTGCATTGCCTTAAGTCAAAGATGGGTTACTGCCAAAGAGGAAGATTTAAGCTCATTCAGCATCGCA
GACCTGAAGGATCTCTCGTCCCATCAGCTGAATGAGTTCCTGGCACAGGTGCTTCAGAAGGCACCTCTTC
CCTTGGGGCACATAAAGCGAATGCAAGAGGTGTACAACTTCAATGCCATTAACAATTCTGAAATACGATT
CAGATGGTTACGGCTCTGCATTCAATCGAAATGGGAGGAAGCAATTCCTTTGGCCCTAAAGATGGCAACT
GAACAAGGAAGGATGAAATTCACACGTCCTCTATTCAAGGATCTCGCTGCCTTCGACAAATCCCATGATC
AAGCTGTCCACACCTACCAAGAGCATAAAGCCAGCATGCATCCCGTGACTGCGATGCTGGTGGGGAGAGA
TCTGAAAGTGGATTAA

Translation (611 aa):
MPEVADTCSLASPASVCRTQHLHLRCSVDFARRTLTGTAALTVQSQEENLRSLTLDTKDLTIEKVVINGQ
EVKYTLGESQGYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPEQTSGKQHPYLFSQCQAIH
CRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGEAPDPEDPSRKIYRFNQRVPIPCYLIALVVGAL
ESRQIGPRTLVWSEKEQVEKSANEFSETESMLKIAEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVT
PTLLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFHALGGWGEL
QNTIKTFGESHPFTKLVVDLKDVDPDVAYSSIPYEKGFALLFYLEQLLGGPEVFLGFLKAYVKKFSYQSV
TTDDWKSFLYSHFKDKVDLLNQVDWNTWLYAPGLPPVKPNYDVTLTNACIALSQRWVTAKEEDLSSFSIA
DLKDLSSHQLNEFLAQVLQKAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWEEAIPLALKMAT
EQGRMKFTRPLFKDLAAFDKSHDQAVHTYQEHKASMHPVTAMLVGRDLKVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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