NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1604.1 Public Homo sapiens 1 GGPS1 24 110 108 CCDS HistoryNCBI Gene:9453Re-query CCDS DB by CCDS ID:1604.1Re-query CCDS DB by GeneID:9453See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1604.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282841.9 ENSP00000282841.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000282841.9Link to Ensembl Protein Viewer:ENSP00000282841.5Re-query CCDS DB by Nucleotide ID:ENST00000282841Re-query CCDS DB by Protein ID:ENSP00000282841
Original member Current member EBI ENST00000358966.6 ENSP00000351852.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358966.6Link to Ensembl Protein Viewer:ENSP00000351852.2Re-query CCDS DB by Nucleotide ID:ENST00000358966Re-query CCDS DB by Protein ID:ENSP00000351852
Original member Current member EBI ENST00000488594.5 ENSP00000418690.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000488594.5Link to Ensembl Protein Viewer:ENSP00000418690.1Re-query CCDS DB by Nucleotide ID:ENST00000488594Re-query CCDS DB by Protein ID:ENSP00000418690
Original member Current member NCBI NM_001037277.1 NP_001032354.1 Accepted alive Link to Nucleotide Sequence:NM_001037277.1Link to Protein Sequence:NP_001032354.1Re-query CCDS DB by Nucleotide ID:NM_001037277Re-query CCDS DB by Protein ID:NP_001032354Link to BLAST:NP_001032354.1
Original member Current member NCBI NM_001371477.1 NP_001358406.1 Accepted alive Link to Nucleotide Sequence:NM_001371477.1Link to Protein Sequence:NP_001358406.1Re-query CCDS DB by Nucleotide ID:NM_001371477Re-query CCDS DB by Protein ID:NP_001358406Link to BLAST:NP_001358406.1
Original member Current member NCBI NM_001371478.1 NP_001358407.1 Accepted alive Link to Nucleotide Sequence:NM_001371478.1Link to Protein Sequence:NP_001358407.1Re-query CCDS DB by Nucleotide ID:NM_001371478Re-query CCDS DB by Protein ID:NP_001358407Link to BLAST:NP_001358407.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032354.1 300 O95749-1 300 100% 0 0
NP_001358406.1 300 O95749-1 300 100% 0 0
NP_001358407.1 300 O95749-1 300 100% 0 0

Chromosomal Locations for CCDS 1604.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 235335265 235335334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235341708 235341778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235342011 235342772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGAGAAGACTCAAGAAACAGTCCAAAGAATTCTTCTAGAACCCTATAAATACTTACTTCAGTTACCAG
GTAAACAAGTGAGAACCAAACTTTCACAGGCATTTAATCATTGGCTGAAAGTTCCAGAGGACAAGCTACA
GATTATTATTGAAGTGACAGAAATGTTGCATAATGCCAGTTTACTCATCGATGATATTGAAGACAACTCA
AAACTCCGACGTGGCTTTCCAGTGGCCCACAGCATCTATGGAATCCCATCTGTCATCAATTCTGCCAATT
ACGTGTATTTCCTTGGCTTGGAGAAAGTCTTAACCCTTGATCACCCAGATGCAGTGAAGCTTTTTACCCG
CCAGCTTTTGGAACTCCATCAGGGACAAGGCCTAGATATTTACTGGAGGGATAATTACACTTGTCCCACT
GAAGAAGAATATAAAGCTATGGTGCTGCAGAAAACAGGTGGACTGTTTGGATTAGCAGTAGGTCTCATGC
AGTTGTTCTCTGATTACAAAGAAGATTTAAAACCGCTACTTAATACACTTGGGCTCTTTTTCCAAATTAG
GGATGATTATGCTAATCTACACTCCAAAGAATATAGTGAAAACAAAAGTTTTTGTGAAGATCTGACAGAG
GGAAAGTTCTCATTTCCTACTATTCATGCTATTTGGTCAAGGCCTGAAAGCACCCAGGTGCAGAATATCT
TGCGCCAGAGAACAGAAAACATAGATATAAAAAAATACTGTGTACATTATCTTGAGGATGTAGGTTCTTT
TGAATACACTCGTAATACCCTTAAAGAGCTTGAAGCTAAAGCCTATAAACAGATTGATGCACGTGGTGGG
AACCCTGAGCTAGTAGCCTTAGTAAAACACTTAAGTAAGATGTTCAAAGAAGAAAATGAATAA

Translation (300 aa):
MEKTQETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNS
KLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPT
EEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTE
GKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGG
NPELVALVKHLSKMFKEENE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH