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Report for CCDS46243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46243.1 Public Homo sapiens 2 ATRAID 24 110 108 CCDS HistoryNCBI Gene:51374Re-query CCDS DB by CCDS ID:46243.1Re-query CCDS DB by GeneID:51374See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46243.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000405489.7 ENSP00000384033.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405489.7Link to Ensembl Protein Viewer:ENSP00000384033.3Re-query CCDS DB by Nucleotide ID:ENST00000405489Re-query CCDS DB by Protein ID:ENSP00000384033
Original member Current member NCBI NM_016085.5 NP_057169.2 Accepted alive Link to Nucleotide Sequence:NM_016085.5Link to Protein Sequence:NP_057169.2Re-query CCDS DB by Nucleotide ID:NM_016085Re-query CCDS DB by Protein ID:NP_057169Link to BLAST:NP_057169.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057169.2 171 Q6UW56-2 171 100% 0 0

Chromosomal Locations for CCDS 46243.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27213252 27213298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27215321 27215392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27215474 27215545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27215632 27215753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27216523 27216620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27216844 27216948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (516 nt):
ATGCTGCATGCCCGTTGCTGCCTGAATCAGAAGGGCACCATCTTGGGGCTGGATCTCCAGAACTGTTCTC
TGGAGGACCCTGGTCCAAACTTTCATCAGGCACATACCACTGTCATCATAGACCTGCAAGCAAACCCCCT
CAAAGGTGACTTGGCCAACACCTTCCGTGGCTTTACTCAGCTCCAGACTCTGATACTGCCACAACATGTC
AACTGTCCTGGAGGAATTAATGCCTGGAATACTATCACCTCTTATATAGACAACCAAATCTGTCAAGGGC
AAAAGAACCTTTGCAATAACACTGGGGACCCAGAAATGTGTCCTGAGAATGGATCTTGTGTACCTGATGG
TCCAGGTCTTTTGCAGTGTGTTTGTGCTGATGGTTTCCATGGATACAAGTGTATGCGCCAGGGCTCGTTC
TCACTGCTTATGTTCTTCGGGATTCTGGGAGCCACCACTCTATCCGTCTCCATTCTGCTTTGGGCGACCC
AGCGCCGAAAAGCCAAGACTTCATGA

Translation (171 aa):
MLHARCCLNQKGTILGLDLQNCSLEDPGPNFHQAHTTVIIDLQANPLKGDLANTFRGFTQLQTLILPQHV
NCPGGINAWNTITSYIDNQICQGQKNLCNNTGDPEMCPENGSCVPDGPGLLQCVCADGFHGYKCMRQGSF
SLLMFFGILGATTLSVSILLWATQRRKAKTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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