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Report for CCDS40620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40620.1 Public Mus musculus 9 Bco2 23 108 98 CCDS HistoryNCBI Gene:170752Re-query CCDS DB by CCDS ID:40620.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40620.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119103.1 ENSMUSP00000112727.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119103.1Link to Ensembl Protein Viewer:ENSMUSP00000112727.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119103Re-query CCDS DB by Protein ID:ENSMUSP00000112727
Original member Current member NCBI NM_133217.3 NP_573480.1 Accepted alive Link to Nucleotide Sequence:NM_133217.3Link to Protein Sequence:NP_573480.1Re-query CCDS DB by Nucleotide ID:NM_133217Re-query CCDS DB by Protein ID:NP_573480Link to BLAST:NP_573480.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573480.1 532 Q99NF1 532 100% 0 0

Chromosomal Locations for CCDS 40620.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 50533406 50533519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50534610 50534720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50535478 50535660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50536231 50536368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50538846 50539013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50540097 50540257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50541043 50541171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50544457 50544559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50545347 50545462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50545865 50546076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50550539 50550702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGTTGGGACCGAAGCAGAGCCTGCCATGCATTGCCCCACTGCTGACCACGGCGGAGGAGACTCTGAGTG
CTGTCTCTGCTCGGGTCCGAGGACATATTCCTGAATGGCTTAATGGTTATCTACTTCGAGTTGGACCTGG
GAAGTTTGAATTTGGGAAGGATAGATACAATCATTGGTTTGATGGAATGGCGTTGCTTCACCAGTTCCGA
ATGGAGAGGGGCACAGTGACATACAAGAGCAAGTTTCTACAGAGTGACACATATAAGGCCAACAGTGCTG
GAGGTAGAATTGTGATCTCAGAATTTGGCACGCTGGCCCTTCCTGACCCATGCAAGAGCATCTTTGAACG
TTTCATGTCAAGGTTTGAGCCACCTACTATGACTGACAACACCAACGTCAACTTTGTGCAGTACAAAGGT
GATTACTACATGAGCACAGAGACTAATTTTATGAATAAGGTGGACATTGAGATGCTGGAAAGGACAGAAA
AGGTGGACTGGAGCAAATTCATTGCTGTGAATGGAGCCACTGCACATCCTCATTACGACCCAGATGGGAC
AGCATACAACATGGGGAACAGCTATGGGCCAAGAGGTTCTTGCTATAATATTATTCGTGTTCCTCCAAAA
AAGAAAGAGCCCGGGGAGACGATTCACGGAGCACAGGTGCTATGTTCCATTGCCTCCACTGAGAAAATGA
AGCCTTCTTACTACCATAGCTTTGGAATGACAAAAAACTACATAATCTTTGTCGAACAGCCTGTAAAGAT
GAAGCTGTGGAAAATAATCACTTCTAAAATCCGGGGAAAGCCCTTTGCTGATGGGATAAGCTGGGAGCCC
CAGTATAACACGCGGTTTCATGTGGTGGATAAACACACTGGACAGCTTCTCCCAGGAATGTACTACAGCA
TGCCTTTTCTTACCTATCATCAAATCAATGCCTTTGAGGACCAGGGCTGTATTGTGATTGATCTGTGCTG
CCAGGATGATGGGAGAAGCCTAGACCTTTACCAACTACAGAATCTCAGGAAAGCTGGAGAGGGGCTTGAT
CAGGTCTATGAGTTAAAGGCAAAGTCTTTCCCTCGAAGATTTGTCTTGCCCTTAGATGTTAGTGTGGATG
CTGCTGAAGGAAAGAACCTCAGCCCACTGTCCTATTCTTCAGCCAGCGCTGTGAAACAGGGTGATGGAGA
GATCTGGTGCTCTCCTGAAAATCTACACCACGAAGACCTGGAAGAGGAAGGGGGGATTGAATTCCCTCAG
ATCAACTATGGCCGATTCAATGGCAAAAAGTATAGTTTCTTCTATGGCTGCGGTTTTCGACATTTGGTGG
GGGATTCTCTGATTAAGGTTGACGTGACGAACAAGACACTAAGGGTTTGGAGAGAAGAAGGCTTTTATCC
CTCGGAGCCCGTTTTTGTTCCGGTGCCAGGAGCAGATGAGGAAGACAGTGGGGTTATACTCTCTGTGGTG
ATCACTCCCAACCAGAGTGAAAGCAACTTCCTCCTTGTCTTGGATGCCAAGAGCTTCACAGAGCTGGGGC
GAGCGGAAGTACCCGTGCAGATGCCTTACGGGTTCCATGGCACCTTTGTGCCTATCTGA

Translation (532 aa):
MLGPKQSLPCIAPLLTTAEETLSAVSARVRGHIPEWLNGYLLRVGPGKFEFGKDRYNHWFDGMALLHQFR
MERGTVTYKSKFLQSDTYKANSAGGRIVISEFGTLALPDPCKSIFERFMSRFEPPTMTDNTNVNFVQYKG
DYYMSTETNFMNKVDIEMLERTEKVDWSKFIAVNGATAHPHYDPDGTAYNMGNSYGPRGSCYNIIRVPPK
KKEPGETIHGAQVLCSIASTEKMKPSYYHSFGMTKNYIIFVEQPVKMKLWKIITSKIRGKPFADGISWEP
QYNTRFHVVDKHTGQLLPGMYYSMPFLTYHQINAFEDQGCIVIDLCCQDDGRSLDLYQLQNLRKAGEGLD
QVYELKAKSFPRRFVLPLDVSVDAAEGKNLSPLSYSSASAVKQGDGEIWCSPENLHHEDLEEEGGIEFPQ
INYGRFNGKKYSFFYGCGFRHLVGDSLIKVDVTNKTLRVWREEGFYPSEPVFVPVPGADEEDSGVILSVV
ITPNQSESNFLLVLDAKSFTELGRAEVPVQMPYGFHGTFVPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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