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Report for CCDS23099.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23099.1 Public Mus musculus 9 Nherf4 23 108 98 CCDS HistoryNCBI Gene:170761Re-query CCDS DB by CCDS ID:23099.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23099.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034618.5 ENSMUSP00000034618.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034618.5Link to Ensembl Protein Viewer:ENSMUSP00000034618.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034618Re-query CCDS DB by Protein ID:ENSMUSP00000034618
Original member Current member NCBI NM_133226.2 NP_573489.2 Accepted alive Link to Nucleotide Sequence:NM_133226.2Link to Protein Sequence:NP_573489.2Re-query CCDS DB by Nucleotide ID:NM_133226Re-query CCDS DB by Protein ID:NP_573489Link to BLAST:NP_573489.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573489.2 498 Q99MJ6 498 99.7992% 0 1

Chromosomal Locations for CCDS 23099.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44247987 44248016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44248231 44248431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44248556 44248762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44248847 44249043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44249235 44249439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44249611 44249747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44249843 44250032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44250251 44250462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44250783 44250856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44250998 44251025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44251440 44251455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGGAGGCAGCTGCAGATCTTCGGGACACGGCCTTGTTAACTCTGAAGTTTAAGTTTAATCCAAGGCTGG
GCATTGACAATCCTGTCCTCTCCCTCGCTGAAGACCAGGACCAATCTGATCCCTGGAACCTGCACCGGCC
TCGCTTTTGTCTGTTGAGCAAGGAGGAGGAAAAGACTTTTGGGTTCCATTTGCAGCAGCATCTAGGCAAG
GCTGACCATGTGGTGTGCAGGGTCGATCCGGGCACCTCAGCCCAGCGCCAGGGTCTCCGGGAAGGAGATC
GGATCCTAGCGGTGAACAATAATATTGTGGCACATGAGGACCACGCGGTGGTAGTGCGCTACATCCGGGC
CAGCGGTCCCCGGGTATTGCTGACAGTCTTGGCACAACACGTGCATGATGTGGCGCGTGTTCTGCAGGGG
AGTGACGCTTTCCTCTGTCCTACCCTACCCTCGGGGGTCAGGCCCCGGTTGTGCCATGTAGTAAAAGATG
AAGGCGGCTTTGGCTTCAGCGTCACCCACGGAAGTCGAGGTCCTTTCTGGTTGGTGCTCAGTGCAGGAGG
AGCTGCTGAGAGGGCAGGGGTGCCCCCTGGAGCCAGGCTGCTGGAAGTGAATGGGGCCAGTGTGGAGAAG
CTCACATACAACCAGCTCAATAGGAAGCTTTGGCAGAGTGGAGATCAGGTGACTCTGCTGGTGGCAGGGC
TGGAGGTAGAGGAACAGTGTCACCAACTAGGAATGCCTCTTGCTGCACCCCTGGCAGAGGGCTGGGCATT
GCCCGCCAAGCCCCGATGTCTAAACATAGAGAAAGGACCTGAAGGCTTTGGGTTCCTGCTCCGGGAGGAG
AAGGGCCTGGATGGCCGACTTGGGCAGTTCTTGTGGGACGTGGATCCAGGACTACCAGCTGACAAGGCTG
GGATGAAGGCTGGAGACCGCCTGGTGGCTGTGGCCGGGGAAAGCGTGGATGGGCTGGGCCATGAGGAAAC
AGTGTCTAGAATCCGGGCACAGGGCTCTTGTGTCTCTCTCATTGTCGTCGATCCTGAGGCTGACCGCTTC
TTCAGCATGGTACGCCTGTCTCCCCTCCTCTTCTTGGAGAACACTGAGATTGCTGCTCCTCCTCTGGCAG
AGACCAAGGATCTTCCGGTTGAAGACACAGTTGAGCCTTCTGGCCTTGCTGGCTCCTGCCAATGCTTCTT
GTACCCGGGGCCTGGAGGTGGCTATGGATTCAGACTCTGCTGTGTGGCCAGTGGGCCTTGTCTTTTCATC
TCCCAGGTGACCCCAGGAGGCTCAGCTGCCCGGGCAGGGCTGCAAGTGGGAGATACAGTTTTGGAGGTGA
ACGGATATCCTGTGGGCGGAGACAGTGAACTGGACAGGCTTCAGCAACTGACTGAGGCTGAGCCACCCCT
CTGCCTGAAGCTAGGAGCTAGGAATCCGCAGGGCTTAGAAGCCTGGATTTCCTTGGAGTCTGGAGAGGAC
TGGACTCTGGCTTCAGAGTTGCTATAG

Translation (498 aa):
MEAAADLRDTALLTLKFKFNPRLGIDNPVLSLAEDQDQSDPWNLHRPRFCLLSKEEEKTFGFHLQQHLGK
ADHVVCRVDPGTSAQRQGLREGDRILAVNNNIVAHEDHAVVVRYIRASGPRVLLTVLAQHVHDVARVLQG
SDAFLCPTLPSGVRPRLCHVVKDEGGFGFSVTHGSRGPFWLVLSAGGAAERAGVPPGARLLEVNGASVEK
LTYNQLNRKLWQSGDQVTLLVAGLEVEEQCHQLGMPLAAPLAEGWALPAKPRCLNIEKGPEGFGFLLREE
KGLDGRLGQFLWDVDPGLPADKAGMKAGDRLVAVAGESVDGLGHEETVSRIRAQGSCVSLIVVDPEADRF
FSMVRLSPLLFLENTEIAAPPLAETKDLPVEDTVEPSGLAGSCQCFLYPGPGGGYGFRLCCVASGPCLFI
SQVTPGGSAARAGLQVGDTVLEVNGYPVGGDSELDRLQQLTEAEPPLCLKLGARNPQGLEAWISLESGED
WTLASELL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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