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Report for CCDS19253.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19253.1 Public Mus musculus 5 Lyar 23 108 98 CCDS HistoryNCBI Gene:17089Re-query CCDS DB by CCDS ID:19253.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19253.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087514.8 ENSMUSP00000084791.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087514.8Link to Ensembl Protein Viewer:ENSMUSP00000084791.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000087514Re-query CCDS DB by Protein ID:ENSMUSP00000084791
Original member Current member EBI ENSMUST00000114106.7 ENSMUSP00000109741.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114106.7Link to Ensembl Protein Viewer:ENSMUSP00000109741.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114106Re-query CCDS DB by Protein ID:ENSMUSP00000109741
Original member NCBI NM_025281.3 NP_079557.2 Updated not alive Link to Nucleotide Sequence:NM_025281.3Link to Protein Sequence:NP_079557.2Re-query CCDS DB by Nucleotide ID:NM_025281Re-query CCDS DB by Protein ID:NP_079557
Current member NCBI NM_025281.4 NP_079557.2 Accepted alive Link to Nucleotide Sequence:NM_025281.4Link to Protein Sequence:NP_079557.2Re-query CCDS DB by Nucleotide ID:NM_025281Re-query CCDS DB by Protein ID:NP_079557Link to BLAST:NP_079557.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079557.2 388 Q08288 388 100% 0 0

Chromosomal Locations for CCDS 19253.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 38224676 38224797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38225889 38226003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38227855 38227962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38228050 38228133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38230561 38230990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38231273 38231359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38233242 38233327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38233991 38234125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGTATTTTTTACATGCAATGCATGTGGTGAATCCGTGAAGAAAATACAAGTGGAAAAGCATGTGTCTA
ACTGCAGAAACTGTGAATGTCTTTCCTGCATTGACTGTGGGAAAGATTTCTGGGGTGATGACTACAAAAG
CCATGTGAAGTGCATCAGTGAAGGTCAGAAGTACGGAGGCAAAGGCTATGAAGCCAAGACACACAAAGGT
GATGCAAAACAGCAGGCATGGATTCAGAAAATTAATGAGTTAATAAAGAAACCCAACGTCAGCCCCAAGG
TGCGAGAACTTTTGCAGCAAATCAGTGCTTTTGATAATGTTCCCAGAAAAAAGGCGAAGTTTCAGAACTG
GATGAAAAACAGCCTGAAAGTGCACAGCGACTCCGTTCTAGAGCAGGTGTGGGATATCTTCTCCGAAGCA
TCCAGCAGTGAGCAAGATCAGCAGCAGCCACCCAGCCACACGGCCAAGCCACATGCAGAGATGCCGATCA
CTAAAGTTCCATCTGCAAAAACAAATGGCACCACAGAAGAGCAAACCGAGGCGAAGAAGAATAAAAGAGA
AAGGAAGGAGGAACGGCAGAAAAACAGGAAGAAAGAGAAGAAAGAGCTGAAGCTAGAAAACCACCAGGAA
AACCTGAGGGGCCAGAAGCCAAAGAAGCGCAAGAAGAACCAGGAGGCCGGACATGAGGCTGCTGGGGAGG
AGGCCGCCGAGGCCAGCGGCCCACCGGAGAAGAAGAAAGCCCAGGGAGGACAGGCTTCTGAAGAGGGAGC
AGACAGAAATGGGGGCCCTGGGGAGGATGCTGCCGAGGGGCAGACCAAGACAGCAGCAGGGAAACGGAAG
CGGCCAAAGCACTCAGGAGCTGAGTCTGGTTACAAGAAAAAAAAGATGAAGTTACCAGAGCAGCCTGAAG
AGGGAGAGGCCAAGGACCACGAGGCTCCATCGAAAGGTAAATTCAACTGGAAGGGGACCATTAAGGCTGT
TTTGAAACAGGCTCCAGACAACGAGATATCAGTCAAGAAGTTAAAGAAAAAGGTTATAGCTCAGTACCAT
GCGGTGATGAACGACCATCACACATCGGAGGAGGAGCTCCTGGCCATCTTCAACAGGAAGATCAGCAGGA
ACCCCACCTTTAAGGTGCTGAAGGACAGAGTAAAGCTTCTGAAGTGA

Translation (388 aa):
MVFFTCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFWGDDYKSHVKCISEGQKYGGKGYEAKTHKG
DAKQQAWIQKINELIKKPNVSPKVRELLQQISAFDNVPRKKAKFQNWMKNSLKVHSDSVLEQVWDIFSEA
SSSEQDQQQPPSHTAKPHAEMPITKVPSAKTNGTTEEQTEAKKNKRERKEERQKNRKKEKKELKLENHQE
NLRGQKPKKRKKNQEAGHEAAGEEAAEASGPPEKKKAQGGQASEEGADRNGGPGEDAAEGQTKTAAGKRK
RPKHSGAESGYKKKKMKLPEQPEEGEAKDHEAPSKGKFNWKGTIKAVLKQAPDNEISVKKLKKKVIAQYH
AVMNDHHTSEEELLAIFNRKISRNPTFKVLKDRVKLLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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