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Report for CCDS26605.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26605.2 Public Mus musculus 13 Zfp369 23 108 98 CCDS HistoryNCBI Gene:170936Re-query CCDS DB by CCDS ID:26605.2See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 26605.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26605.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000126879.7 ENSMUSP00000119114.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126879.7Link to Ensembl Protein Viewer:ENSMUSP00000119114.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126879Re-query CCDS DB by Protein ID:ENSMUSP00000119114
Original member Current member NCBI NM_178364.5 NP_848141.3 Accepted alive Link to Nucleotide Sequence:NM_178364.5Link to Protein Sequence:NP_848141.3Re-query CCDS DB by Nucleotide ID:NM_178364Re-query CCDS DB by Protein ID:NP_848141Link to BLAST:NP_848141.3

Chromosomal Locations for CCDS 26605.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 65278972 65278987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65279261 65279340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65280262 65280388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65284921 65285016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65291823 65292305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65294396 65294484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65295600 65295726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65296063 65297582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2538 nt):
ATGGACCCCGGAGAAGGACGATCAGCATTCTGCCTCCTACCGCTAGAGAACACTGAGGACAGTATGGCTT
CCACGCTTCCAACAACCTGGCCCCATGAATCTGTGAAGTTTGAAGATGTATCACTGAGATTTACCGAGGA
AGAGTGGGCACTGCTAGATCGCCAACAGAAGTGCCTGTACAGGGAAATCATGATGGAGAACCTCAATAAC
ATGATTTCAGTAGAGCATCACTTTTCCAAGGCAAATGTGATGCCTCAGTTAGAAGAAGTAGAAGACTGCT
GGCCAATGCAGAGAGAAATTCCTCAAGATACTCTTCCAGAATGCTCTGGGCATTCTCTGGACCCTGAAAT
GAATTCCTTTCCTGCTGAGAGTCCCCTGATGAAGATTAAGGTTGTTGAGGTCCTTACATTGAACAAGGAT
ATGGCTGGTCCCCGGAATGCCCTGATTCAATCCCTCTATCCAGAAAGTGGGGAAGACTTGAACCCAGGTA
ACCTCAAGCCAGCTCAACAGCCAAGCAAGCATTTGACTGACACTGAAGCTTCGCGACAGAAGTTCCGACA
TTTCCAGTATGAAGAGTCAGCTGGTCCCCAGAAGTCTGTGTCCCAGCTTCGTAAGCTGTGTCACCAGTGG
CTGCAGCCCAGTACACGTTCAAAGAAGCAGATCCTAGAGTTGCTGGTGCTCGAGCAGTTCCTGAATGCAT
TGCCTGAGAAGCTTCGGGTATGGGTAGAGTCGCAGCACCCAGAAGACTGCAAAGCAGTGGTGGCTTTGTT
GGAGAATATGACCTCAGTGTCTAAGGACGATGCTTGGCTTGCCTGTTCTAGTGAAGCCACTGATGAACTA
AAGGAGAAAAGGAAGGATGTAGCCACCTTACCAGTTACTGTACCACCTGAGGCGCCGGTGACTTTCCAGG
ATGTGGCTGTAGACTTCAGTCAGGAGGAGTGGCAGCTACTAGGTCCAATGCAAAGGACCAAGTATCATGA
TGTGATGCTAGAGACCTTGGGCAACTTGGTGTCTGTGGGGTGGGAGCCTACGTTGGGAAACAGAGAGTTA
ACTCCAGACTCTCCCATACCTGTGGTAAAGCCAATTCATGACCCAAACCCAAAAGATCTCTCGAGGAATC
GTACCCAGTCTACCCTCTTTGAAAGTATCTCACCAGATGAGGTCCAGGGAAGGCACACCATAGAATCAAA
TCCAGTGGGGCTTCTACAGGAAAAAGGCCACCCTCAGCAGAAGCTCTCTGAAAGCTCCAAGTCTCAGAAC
CAAACTTGTATTGACAAAAGCCAGTGCTCACTCAATGAAGTTCTTCCTAGAAATCATGTAAAAGTTAAGC
AGAAGGGCACGGGAAAGGGGAAAGGCAGGACAAACACCATTTCCATGACAGGAGGTTTACGCATAAGAAA
TCAGCAGAAGGACTCCGTGGAGTGGCGAGACAGGAGTGGCAGCACTCCTGTGACACATGGCTCCTCTATA
AAAAACCAACAATTGGGTTCTGAGCAGGGAAAAACTCAGACCAGCAGAGATCCCATTACACTTGCTGTGC
CTGCAGAATTTTACCAGGAAGCCACTGGCTCTGAAGAGGGTAGGTTTAGGAACAGTAGCAATGCCATGGC
AGCTGATGCACCTCCAAAGATTCACCAGAAAGGCCCTGAATGGCATAAAGCTGGGAAAAGTAACAATTCC
ATGTTACAAGGTTCATCTGCACAAAATCACCAGATGGGGTCTAGGGCAGGAAGAGCCAGGGACAACAGCA
TCTTAACACATGTAAAAATTCACCAGAAAGGCTATAAAGAAGGCAAAATCCAAGGAAACAATAATTACTT
GAAACATGTAAAACCTCACCAGAAGGGTTCTAAAGAGGAAAGACTCAGGGAACTTAGCACTTGTCAAAAA
CATGTCCCCTATGTAAAACAACACCTAAAGACCTCAGGAAGAGGAAAAGGCAGGAAAATCAATGCTTCCA
TAAAATGTGGTCCCTATATAAAAACTTACTATAGAGGTTCTGATGTGGGAAGGCTCAGGAGAGCCAACAA
TTGTAGGAAAGCCATCAGCCGGCATGCTCAGCAGATATCCTTTATAAAAATTCACAAGGGGAGCCAAATT
TGCCAATGCAGTGAATGTGGTAAAATGTTCCGGAATGCTAGGTATTTCTCTGTCCATAAGAAGATCCACA
CAGGAGAGCGGCCTTACATGTGTATGTCCTGTGGGAAAGCATTTGTTCAGAGCTCCTCCCTCACACAGCA
TCTTAGAATTCACAGTGGAGAGAGACCCTTTGAGTGTTCAGAGTGTGGGAGAACTTTCAGTGACCGCTCA
GCTGCCTCTCAGCACCTGAGAACTCATACTGGAGCTAAGCCCTACCAATGTCAGCACTGTGGGAAAGCTT
TCCGCCAGAGTTCCCACCTCACCAGGCATGTGAGAATTCATACTGGGGAGCGACCTTATGTGTGTACCAA
GTGTGGGAAGGCATTCACACAGAGCTCAAACCTTATTGGGCATCAGAAAACACACAGAAAGAAGTTCAAG
AAGCAGCCTAAATTGTAG

Translation (845 aa):
MDPGEGRSAFCLLPLENTEDSMASTLPTTWPHESVKFEDVSLRFTEEEWALLDRQQKCLYREIMMENLNN
MISVEHHFSKANVMPQLEEVEDCWPMQREIPQDTLPECSGHSLDPEMNSFPAESPLMKIKVVEVLTLNKD
MAGPRNALIQSLYPESGEDLNPGNLKPAQQPSKHLTDTEASRQKFRHFQYEESAGPQKSVSQLRKLCHQW
LQPSTRSKKQILELLVLEQFLNALPEKLRVWVESQHPEDCKAVVALLENMTSVSKDDAWLACSSEATDEL
KEKRKDVATLPVTVPPEAPVTFQDVAVDFSQEEWQLLGPMQRTKYHDVMLETLGNLVSVGWEPTLGNREL
TPDSPIPVVKPIHDPNPKDLSRNRTQSTLFESISPDEVQGRHTIESNPVGLLQEKGHPQQKLSESSKSQN
QTCIDKSQCSLNEVLPRNHVKVKQKGTGKGKGRTNTISMTGGLRIRNQQKDSVEWRDRSGSTPVTHGSSI
KNQQLGSEQGKTQTSRDPITLAVPAEFYQEATGSEEGRFRNSSNAMAADAPPKIHQKGPEWHKAGKSNNS
MLQGSSAQNHQMGSRAGRARDNSILTHVKIHQKGYKEGKIQGNNNYLKHVKPHQKGSKEERLRELSTCQK
HVPYVKQHLKTSGRGKGRKINASIKCGPYIKTYYRGSDVGRLRRANNCRKAISRHAQQISFIKIHKGSQI
CQCSECGKMFRNARYFSVHKKIHTGERPYMCMSCGKAFVQSSSLTQHLRIHSGERPFECSECGRTFSDRS
AASQHLRTHTGAKPYQCQHCGKAFRQSSHLTRHVRIHTGERPYVCTKCGKAFTQSSNLIGHQKTHRKKFK
KQPKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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