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Report for CCDS51835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51835.1 Public Mus musculus 6 Mxd1 23 108 98 CCDS HistoryNCBI Gene:17119Re-query CCDS DB by CCDS ID:51835.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51835.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001184.9 ENSMUSP00000001184.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001184.9Link to Ensembl Protein Viewer:ENSMUSP00000001184.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001184Re-query CCDS DB by Protein ID:ENSMUSP00000001184
Original member NCBI NM_010751.3 NP_034881.2 Updated not alive Link to Nucleotide Sequence:NM_010751.3Link to Protein Sequence:NP_034881.2Re-query CCDS DB by Nucleotide ID:NM_010751Re-query CCDS DB by Protein ID:NP_034881
Current member NCBI NM_010751.4 NP_034881.2 Accepted alive Link to Nucleotide Sequence:NM_010751.4Link to Protein Sequence:NP_034881.2Re-query CCDS DB by Nucleotide ID:NM_010751Re-query CCDS DB by Protein ID:NP_034881Link to BLAST:NP_034881.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034881.2 227 P50538 227 99.5595% 0 1

Chromosomal Locations for CCDS 51835.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 86650871 86651079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86651442 86651601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86653085 86653199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86663071 86663100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86668538 86668634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86668936 86669008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGCGACAGCCGTCGGGATGAACATCCAGCTGCTGCTGGAGGCGGCCGACTACCTGGAGCGGCGGGAGA
GAGAAGCTGAACATGGGTATGCCTCCATGCTGCCATACAGCAAGGACAGAGATGCCTTCAAACGGAGGAA
CAAGCCCAAGAAGAACAGCACCAGTAGCAGATCAACTCACAATGAAATGGAAAAGAACAGGCGTGCTCAC
CTCCGCCTGTGCCTAGAGAAGCTAAAGGGATTGGTACCGCTGGGCCCTGAGTCAAGCCGACACACCACTC
TGAGCTTGCTGACAAAAGCCAAATTGCATATAAAGAAACTTGAAGACTGTGACAGAAAAGCTGTCCACCA
AATAGACCAGCTTCAGCGGGAACAGCGGCACCTGAAGCGGCGGCTGGAGAAGCTGGGTGCCGAGAGGACT
CGGATGGACAGCGTGGGCTCTGTGGTGTCTTCGGAGCGCTCTGACTCTGATAGAGAAGAACTGGACGTGG
ACGTAGACGTGGACGTGGACGTGGATGTGGAGGGCACAGACTACCTCAATGGGGACCTGGGCTGGAGCAG
CAGCGTGAGTGACTCGGACGAGCGAGGCAGCATGCAGAGCCTGGGCAGTGACGAGGGCTACTCCAGTGCC
ACTGTCAAAAGAGCCAAGCTCCAGGACGGGCACAAGGCGGGCCTCAGTCTATAG

Translation (227 aa):
MATAVGMNIQLLLEAADYLERREREAEHGYASMLPYSKDRDAFKRRNKPKKNSTSSRSTHNEMEKNRRAH
LRLCLEKLKGLVPLGPESSRHTTLSLLTKAKLHIKKLEDCDRKAVHQIDQLQREQRHLKRRLEKLGAERT
RMDSVGSVVSSERSDSDREELDVDVDVDVDVDVEGTDYLNGDLGWSSSVSDSDERGSMQSLGSDEGYSSA
TVKRAKLQDGHKAGLSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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