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Report for CCDS21834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21834.1 Public Mus musculus 7 Apobr 23 108 98 CCDS HistoryNCBI Gene:171504Re-query CCDS DB by CCDS ID:21834.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21834.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039522.7 ENSMUSP00000042028.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039522.7Link to Ensembl Protein Viewer:ENSMUSP00000042028.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000039522Re-query CCDS DB by Protein ID:ENSMUSP00000042028
Original member Current member NCBI NM_138310.1 NP_612183.1 Accepted alive Link to Nucleotide Sequence:NM_138310.1Link to Protein Sequence:NP_612183.1Re-query CCDS DB by Nucleotide ID:NM_138310Re-query CCDS DB by Protein ID:NP_612183Link to BLAST:NP_612183.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612183.1 942 Q8VBT6 942 100% 0 0

Chromosomal Locations for CCDS 21834.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126585012 126585068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126585376 126587811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126587897 126588162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126588257 126588326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2829 nt):
ATGGATTTTCTCCGGCTTCGTCTCCCTGGGCTACATCAGGCTTTGAGGGGAGCACTGGACTCCTTCAGTG
CGTTTGTGTCCTACCTCGTAGGAGACACAGTCCCCACAGTAGAGAGGCAGACACAGGCAGCTGAGGAACT
GGGAGAGGTGACTGAGGGGAAGGTTGTAGGAGAGGAAGCCCAGGAGGTACTGGAGGGACTTAGAAGTGGC
CAGAGTGAGGGGGTAGAAGCACCCGAAGAGACTAGAAGATGCCAAGAAGGAAGTTTAGCTGGTGAACAGA
CCTGGGGGTGGAGAGCAGATAGCTCTGCAAGGCCCCAAGCAGAAAGGCAGGACACTGGGTCCTGGAAGGC
AGCTGAGGATGCCAGGGGCCAGGAGCCAAGTGTCCCACTGAAGCCTGAGGCAGAGCCTGGGACTCACAGA
GACAGGAGCAGTAATACAGCCCAGGAGATCTGGGAGCACGGTGAAGAGGAAGCAAGCAGTGGGGAGCCTC
TGAGAACCTGTGAACAGAAGGAAGAAGAGGAGGAGGTGGTCAGAGCAGCAGAGTCAGGGATGGCCGAGGG
GGTGGAGTCACAGCCAACCTGGCACAGCGAGCCTGGGGGGAATGCTGGCACTGAGGGGCAGCATGTGACA
GAGGACAGCAAAGAGATAGACTGGGTGGCCAAAGACATGGTTGCAGAAATCGAATGGTTTGGTGCCAAAG
GGATTGACAAGGAAGAGGAGAGGATGGTCCCAATGAGGGATGGTGAAAGGGCAAGGGCACAGGGGACACA
ATGCCCCGGGGCCGAGTCTGAGGACCAGGCCATGTTGAGTAGAGAGGCCTGGACAGTCTCAGACAGGGAG
GGGGCTGATAGCCTAGGAGTTCAGGGAACAGAATACGGGTCAGACCCAGGAGACAACTTCCCAGGAACTA
CTGGGAGAGTCTGGGTCCTAGAAGAGGCTGACAAGGGAGACCAGCAGGATGAGGTCGACGAGAAGAGAGA
GGCTGAAGTTAGGTTTCCGATCCAGACCCTGGAGGCTGAGAGAACTGGAGAGATGACTGAAGGCCACATA
GCTGAAGAGGAGGCTATGGGAGAACAGGAAACAGAGGGCAGCTTTGAGGATGAGGAGAGGCAAGACTTAG
CCATCAGGGATAATGGAGTGAGTCTAGAAGAAGAGGTACGGGCAGAAGAATCCTCCAGGGAGAAAAGGAA
CTCCTGGGCCACAGAGCCTACGCTAGTCCTAGACACGGAGGCTAAAGATGAACCTGACTGGGAAGACTCT
CCAGAAGTCAGCACTGAGGAGTTGTTTGTGGGAGAGAGGAGTGAAGCCGCCCAGATGACACCAGAGGTAT
TGAGAGTAAAGGTCACTGAAGGACAGGACCCTGAGCTGGTGAGACATTCCCAGGCTTTAACTAAACAACT
TGAGGAAGGACAGAAGGGTCAGGAAGAGACTAGTGGAGCTCCAGACCTGAGCCCAGAGCGGGTGCTAAGC
TTGAAGGAATATCCTGGGCCTGTGGGGTTTGCAGGCCCTGAGCTAGAAGCCTGGGGAAACTGGAGTAGGG
GTGTGGACCGCAGAAATAGCCAGGAGGTAAAAGCAGATGCTGAAGCAGGCAAGGAACAGACTGCAACCGA
GCAGGCAGTGGAGATCCGGGCTGAAGGAGGCCAGGAGGCCCAACAGCCAGAGGTCTTCGGGTCAGGAGGA
GAGGAGGCACTGACCTCCGTAGCACTTAACCCGGAGCTGGAGGGAAGCCAAGGAGCAGAGGCGGGGACAG
AAGAGTCAGTGGAGGAATCCAAGCCCACAGAAAACGAGGCTGCTGAGGAGGAGGCTGTAGTGCCTTGGGA
GGCAGATGGAACTTGCAGGAAGAGGAGGCTGGAGGAGGTGACTCTGAGCCTGCAAGACAGTGAGGACACA
GAGACCAGTTATTTGGCTGAGGAGATTATTGTGGGTATCAGGGCCGTGGATACCGAGGAAGGGCCAAAAT
GGGAAGCTGGGTTGGCTCCAGAAACAGAGCTTGGGAAAGCCTGGTGTTCCGAGGGCAGAGGGGAGGCTGG
GAGAGGCACGGAGCTGGAGGAGACTACAGAGAAGCAAAGTGGACAGGAAGTTGGCTTGGTGGGCTCAGCA
GAGAAGGTGTCTGGCTATGATATCCAAGAAATTGATGGGACTGAAGAGGGGGAGCAGGCAGAGATGGAGA
CATCTGTAATGGCAGAAGACATAAGGGGGACGGATGGTGTGACTTTAGGCTCCCAGGCAGAGAGAGCAGA
GGGGTCCATAACCCCCATGGAGACTGAGGGGCTCCTAAGAGATCAGATGCTGTTGGAAGAAGAGGCTGGG
GGAGGGCAGTCGCGAGAGCAGAAGGTCCACAACTCAGAGGGCGAGATCCAAACGCTGGACGACTCTTCAG
ACCAGGAGGGGCAGCAGACACACCAAATCCCCACAGTAGCTGTGCCTGGGCCCTTGGAATCGGCTGAGGC
CACGGCAGGTGCCCCAGGGGATGTTCACAGCAACTGGAATGAGGCCCTGCTCCCTGGGTCCCGCCTGGAT
GTCTCTGTCCCTCGGAGTCGTGTGCTCCTCTCTCGAAGCTCCTCACGGCGGCGCTCGAGGCCCTCTTTCC
ATCGAATCTCTGTTCCTGAGCCACAGTGTGACCCTCCCAGCCCCCAACCCCAGGCGGAGCGGCCGGTCCC
TGAGCAATCCTCTCTTCAGCTAGAGGAAACTCCAGAGCTAAGTGCCACAAAGCCCGAGGGGACTCCAGTG
CCAGCCAGAAGAAAAATGCTGGGGCGTGGGTTTGGCTTTGCTCATCCTGGCATGATGCAGGAGCTGCAAG
CCCGACTGAGCCAGCCAAAGCCACAGTGA

Translation (942 aa):
MDFLRLRLPGLHQALRGALDSFSAFVSYLVGDTVPTVERQTQAAEELGEVTEGKVVGEEAQEVLEGLRSG
QSEGVEAPEETRRCQEGSLAGEQTWGWRADSSARPQAERQDTGSWKAAEDARGQEPSVPLKPEAEPGTHR
DRSSNTAQEIWEHGEEEASSGEPLRTCEQKEEEEEVVRAAESGMAEGVESQPTWHSEPGGNAGTEGQHVT
EDSKEIDWVAKDMVAEIEWFGAKGIDKEEERMVPMRDGERARAQGTQCPGAESEDQAMLSREAWTVSDRE
GADSLGVQGTEYGSDPGDNFPGTTGRVWVLEEADKGDQQDEVDEKREAEVRFPIQTLEAERTGEMTEGHI
AEEEAMGEQETEGSFEDEERQDLAIRDNGVSLEEEVRAEESSREKRNSWATEPTLVLDTEAKDEPDWEDS
PEVSTEELFVGERSEAAQMTPEVLRVKVTEGQDPELVRHSQALTKQLEEGQKGQEETSGAPDLSPERVLS
LKEYPGPVGFAGPELEAWGNWSRGVDRRNSQEVKADAEAGKEQTATEQAVEIRAEGGQEAQQPEVFGSGG
EEALTSVALNPELEGSQGAEAGTEESVEESKPTENEAAEEEAVVPWEADGTCRKRRLEEVTLSLQDSEDT
ETSYLAEEIIVGIRAVDTEEGPKWEAGLAPETELGKAWCSEGRGEAGRGTELEETTEKQSGQEVGLVGSA
EKVSGYDIQEIDGTEEGEQAEMETSVMAEDIRGTDGVTLGSQAERAEGSITPMETEGLLRDQMLLEEEAG
GGQSREQKVHNSEGEIQTLDDSSDQEGQQTHQIPTVAVPGPLESAEATAGAPGDVHSNWNEALLPGSRLD
VSVPRSRVLLSRSSSRRRSRPSFHRISVPEPQCDPPSPQPQAERPVPEQSSLQLEETPELSATKPEGTPV
PARRKMLGRGFGFAHPGMMQELQARLSQPKPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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