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Report for CCDS18713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18713.1 Public Mus musculus 4 Matn1 23 108 98 CCDS HistoryNCBI Gene:17180Re-query CCDS DB by CCDS ID:18713.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18713.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102576.3 ENSMUSP00000099636.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102576.3Link to Ensembl Protein Viewer:ENSMUSP00000099636.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102576Re-query CCDS DB by Protein ID:ENSMUSP00000099636
Original member Current member NCBI NM_010769.2 NP_034899.2 Accepted alive Link to Nucleotide Sequence:NM_010769.2Link to Protein Sequence:NP_034899.2Re-query CCDS DB by Nucleotide ID:NM_010769Re-query CCDS DB by Protein ID:NP_034899Link to BLAST:NP_034899.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034899.2 500 P51942 500 100% 0 0

Chromosomal Locations for CCDS 18713.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 130944424 130944529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130945829 130946175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130949935 130950157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130951289 130951414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130951839 130952255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130952833 130952985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130954336 130954416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130954967 130955016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGAAGGTCACCTCTGGTCCAGCCTTTGCTCTCTGTAGCCTGCTGCTCCTGCTGCTGCTGCTGCTACAGG
TC
CCTGATAGCCTCAGTCTTGTCCCCCAGCCCAGAGGGCACCTCTGCCGGACACGACCCACGGACCTGGT
G
TTTGTTGTCGATAGCTCTCGAAGTGTGAGACCCGTGGAGTTTGAGAAGGTGAAGGTATTCCTGTCTCAG
GTC
ATTGAGTCACTGGATGTGGGGCCCAATGCCACGAGGGTGGGCTTGGTCAACTACGCCAGCACTGTGA
AA
CCAGAGTTCCCGCTCCGGGCCCATGGCTCCAAGGCCTCGCTGCTGCAAGCTGTGCGCCGCATCCAGCC
G
CTGTCCACGGGTACCATGACTGGCCTGGCTCTGCAATTCGCCATCACCAAGGCCTTGAGTGATGCTGAG
GGT
GGACGCGCCAGATCCCCCGACATCAGCAAGGTTGTCATCGTGGTGACTGATGGGAGGCCCCAGGACA
GC
GTGCGGGACGTGTCTGAGCGCGCGAGGGCCAGTGGCATTGAGCTGTTCGCCATCGGCGTGGGCCGCGT
G
GACAAGGCTACGCTGCGACAGATCGCTAGCGAGCCGCAGGACGAGCACGTGGATTACGTGGAGAGCTAC
AAT
GTCATCGAGAAGCTGGCCAAGAAGTTCCAAGAGGCCTTCTGCGTGGTGTCCGACCTGTGTGCCACAG
GG
GACCATGATTGTGAGCAGCTGTGCGTTAGTTCTCCTGGCTCCTACACCTGTGCCTGCCATGAGGGCTT
C
ACCCTGAACAGCGATGGCAAGACCTGCAATGTCTGCCGTGGGGGTGGAAGCGGCTCAGCCACCGACCTG
GTC
TTCCTCATCGACGGATCCAAGAGCGTGCGGCCTGAGAACTTTGAGCTGGTGAAGAAGTTCATCAACC
AG
ATTGTGGACACGTTAGATGTGTCGGACAGGCTAGCCCAGGTGGGGCTGGTGCAGTACTCCAGCTCCAT
T
CGCCAGGAGTTCCCACTCGGCCGCTTCCACACCAAGAAGGACATTAAGGCCGCGGTGCGGAACATGTCC
TAC
ATGGAGAAAGGCACCATGACTGGCGCCGCCTTGAAGTATCTCATAGATAATTCTTTCACTGTGTCCA
GC
GGGGCAAGGCCTGGAGCCCAGAAGGTGGGCATCGTCTTCACCGATGGCCGGAGCCAGGACTACATTAA
T
GACGCTGCCAGGAAGGCCAAGGACCTTGGCTTTAAGATGTTTGCGGTGGGCGTGGGCAATGCTGTGGAG
GAA
GAGCTGAGGGAGATCGCTTCCGAGCCCGTGGCAGACCACTACTTTTACACAGCTGACTTCAAGACCA
TC
AACCAGATTGGCAAGAAGCTGCAGAAACAAATCTGTGTGGAGGAAGACCCCTGTGCTTGTGAGTCCAT
A
CTGAAATTTGAGGCCAAGGTGGAGGGTCTGCTGCAGGCCCTGACCAGGAAGCTGGAAGCTGTGAGCGGG
CGG
CTGGCTGTCCTGGAGAACAGAATCATCTAA


Translation (500 aa):
MKVTSGPAFALCSLLLLLLLLLQVPDSLSLVPQPRGHLCRTRPTDLVFVVDSSRSVRPVEFEKVKVFLSQ
V
IESLDVGPNATRVGLVNYASTVKPEFPLRAHGSKASLLQAVRRIQPLSTGTMTGLALQFAITKALSDAE
G
GRARSPDISK
VVIVVTDGRPQDSVRDVSERARASGIELFAIGVGRVDKATLRQIASEPQDEHVDYVESY
N
VIEKLAKKFQEAFC
VVSDLCATGDHDCEQLCVSSPGSYTCACHEGFTLNSDGKTCNVCRGGGSGSATDL
V
FLIDGSKSVRPENFELVKKFINQIVDTLDVSDRLAQVGLVQYSSSIRQEFPLGRFHTKKDIKAAVRNMS
Y
MEKGTMTGAALKYLIDNSFTVSSGARPGAQKVGIVFTDGRSQDYINDAARKAKDL
GFKMFAVGVGNAVE
E
ELREIASEPVADHYFYTADFKTINQIGKKLQKQICV
EEDPCACESILKFEAKVEGLLQALTRKLEAVSG
R
LAVLENRII




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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