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Report for CCDS88558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88558.1 Public Mus musculus 14 Gm3667 23 108 98 CCDS HistoryNCBI Gene:100042100Re-query CCDS DB by CCDS ID:88558.1Re-query CCDS DB by GeneID:100042100See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88558.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171906.1 ENSMUSP00000133107.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171906.1Link to Ensembl Protein Viewer:ENSMUSP00000133107.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171906Re-query CCDS DB by Protein ID:ENSMUSP00000133107
Current member NCBI NM_001374143.1 NP_001361072.1 Accepted alive Link to Nucleotide Sequence:NM_001374143.1Link to Protein Sequence:NP_001361072.1Re-query CCDS DB by Nucleotide ID:NM_001374143Re-query CCDS DB by Protein ID:NP_001361072Link to BLAST:NP_001361072.1

Chromosomal Locations for CCDS 88558.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 6869638 6869647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 6872190 6872372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 6873048 6873179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 6874130 6874292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 6875026 6875155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGTTTTCCTGGCTGCTCAGGCTATTTCAGAAAGAGAATGGCGATGAAGGAGAGACCAGACCAACAGAGA
AGGAAGAGGGAATCCTTTCTCATGAAAAAGGAAGAAGGAAATCATTCTGGAGAAGGCACAGGTCTGCTAG
AAATACTTCAACCCAAAATTCCAAAATGACTAAGAAGAGATCAAAAATAAATGAACTAGAAGAACTGAAA
TTGGATATGAGGAAGATCAGCAATGACATGGAGGAAATGTGTGGAATCCTGAACCTTTACATGTATGAGG
ATTTGAACTACAGGATGAACACTGAATTCAACATCATTAAATCACAACATGAGAAGACAATGTTGGATAT
GAATAAAATGATCCAGTCCATAATTGGTTCCATGCAGTACTCCAAGGAACTGATAGAAGATAACTATTCC
TACAGCATTAAGGAGGACCACCTCCTCCGTGAGTGCACTCAACTCAACGAAAAAGTAAGGATATTACTGA
ATGAGAACAGAAGGCTGCTGGTGGAGCAGGCTGGCCATAAGTGTCCTGTGGGGAAGAAAAGAGGTTCTCT
GAGGAAGCCAGCAAGAACATCTGTGTCCCAAGTGCCAAGGAACAGCAGTGTGAAATAG

Translation (205 aa):
MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKINELEELK
LDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYS
YSIKEDHLLRECTQLNEKVRILLNENRRLLVEQAGHKCPVGKKRGSLRKPARTSVSQVPRNSSVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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