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Report for CCDS4494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4494.1 Public Homo sapiens 6 FARS2 24 110 108 CCDS HistoryNCBI Gene:10667Re-query CCDS DB by CCDS ID:4494.1Re-query CCDS DB by GeneID:10667See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4494.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274680.9 ENSP00000274680.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274680.9Link to Ensembl Protein Viewer:ENSP00000274680.4Re-query CCDS DB by Nucleotide ID:ENST00000274680Re-query CCDS DB by Protein ID:ENSP00000274680
Original member Current member EBI ENST00000324331.10 ENSP00000316335.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000324331.10Link to Ensembl Protein Viewer:ENSP00000316335.5Re-query CCDS DB by Nucleotide ID:ENST00000324331Re-query CCDS DB by Protein ID:ENSP00000316335
Original member Current member NCBI NM_001318872.2 NP_001305801.1 Accepted alive Link to Nucleotide Sequence:NM_001318872.2Link to Protein Sequence:NP_001305801.1Re-query CCDS DB by Nucleotide ID:NM_001318872Re-query CCDS DB by Protein ID:NP_001305801Link to BLAST:NP_001305801.1
Original member Current member NCBI NM_001374875.1 NP_001361804.1 Accepted alive Link to Nucleotide Sequence:NM_001374875.1Link to Protein Sequence:NP_001361804.1Re-query CCDS DB by Nucleotide ID:NM_001374875Re-query CCDS DB by Protein ID:NP_001361804Link to BLAST:NP_001361804.1
Original member Current member NCBI NM_001374876.1 NP_001361805.1 Accepted alive Link to Nucleotide Sequence:NM_001374876.1Link to Protein Sequence:NP_001361805.1Re-query CCDS DB by Nucleotide ID:NM_001374876Re-query CCDS DB by Protein ID:NP_001361805Link to BLAST:NP_001361805.1
Original member Current member NCBI NM_001374877.1 NP_001361806.1 Accepted alive Link to Nucleotide Sequence:NM_001374877.1Link to Protein Sequence:NP_001361806.1Re-query CCDS DB by Nucleotide ID:NM_001374877Re-query CCDS DB by Protein ID:NP_001361806Link to BLAST:NP_001361806.1
Original member Current member NCBI NM_001374878.1 NP_001361807.1 Accepted alive Link to Nucleotide Sequence:NM_001374878.1Link to Protein Sequence:NP_001361807.1Re-query CCDS DB by Nucleotide ID:NM_001374878Re-query CCDS DB by Protein ID:NP_001361807Link to BLAST:NP_001361807.1
Original member Current member NCBI NM_001374879.1 NP_001361808.1 Accepted alive Link to Nucleotide Sequence:NM_001374879.1Link to Protein Sequence:NP_001361808.1Re-query CCDS DB by Nucleotide ID:NM_001374879Re-query CCDS DB by Protein ID:NP_001361808Link to BLAST:NP_001361808.1
Original member Current member NCBI NM_001375257.1 NP_001362186.1 Accepted alive Link to Nucleotide Sequence:NM_001375257.1Link to Protein Sequence:NP_001362186.1Re-query CCDS DB by Nucleotide ID:NM_001375257Re-query CCDS DB by Protein ID:NP_001362186Link to BLAST:NP_001362186.1
Original member Current member NCBI NM_006567.5 NP_006558.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006567.5Link to Protein Sequence:NP_006558.1Re-query CCDS DB by Nucleotide ID:NM_006567Re-query CCDS DB by Protein ID:NP_006558Link to BLAST:NP_006558.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305801.1 451 O95363 451 100% 0 0
NP_001361804.1 451 O95363 451 100% 0 0
NP_001361805.1 451 O95363 451 100% 0 0
NP_001361806.1 451 O95363 451 100% 0 0
NP_001361807.1 451 O95363 451 100% 0 0
NP_001361808.1 451 O95363 451 100% 0 0
NP_001362186.1 451 O95363 451 100% 0 0
NP_006558.1 451 O95363 451 100% 0 0

Chromosomal Locations for CCDS 4494.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 5368571 5369182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5404542 5404701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5431041 5431172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5545180 5545340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5613169 5613320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5771291 5771429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGGTGGGCTCAGCTCTCAGGAGAGGTGCCCATGCATATGTCTACCTGGTGAGTAAGGCCAGTCACATCT
CCAGAGGCCATCAGCACCAGGCCTGGGGATCGAGGCCTCCTGCAGCAGAGTGTGCCACCCAAAGAGCTCC
AGGCAGTGTGGTGGAGCTGCTGGGCAAATCCTACCCTCAGGACGACCACAGCAACCTCACCCGGAAGGTC
CTCACCAGAGTTGGCAGGAACCTGCACAACCAGCAGCATCACCCTCTGTGGCTGATCAAGGAGAGGGTGA
AGGAGCACTTCTACAAGCAGTATGTGGGCCGCTTTGGGACCCCGTTGTTCTCGGTCTACGACAACCTTTC
TCCAGTGGTCACGACCTGGCAGAACTTTGACAGCCTGCTCATCCCAGCTGATCACCCCAGCAGGAAGAAG
GGGGACAACTATTACCTGAATCGGACTCACATGCTGAGAGCGCACACGTCTGCACACCAGTGGGACTTGC
TGCACGCGGGACTGGATGCCTTCCTGGTGGTGGGTGATGTCTACAGGCGTGACCAGATCGACTCCCAGCA
CTACCCTATTTTCCACCAGCTGGAGGCCGTGCGGCTCTTCTCCAAGCATGAGTTATTTGCTGGTATAAAG
GATGGAGAAAGCCTGCAGCTCTTTGAACAAAGTTCTCGCTCTGCGCATAAACAAGAGACACACACCATGG
AGGCCGTGAAGCTTGTAGAGTTTGATCTTAAGCAAACGCTTACCAGGCTCATGGCACATCTTTTTGGAGA
TGAGCTGGAGATAAGATGGGTAGACTGCTACTTCCCTTTTACACATCCTTCCTTTGAGATGGAGATCAAC
TTTCATGGAGAATGGCTGGAAGTTCTTGGCTGCGGGGTGATGGAACAACAACTGGTCAATTCAGCTGGTG
CTCAAGACCGAATCGGCTGGGCTTTTGGCCTAGGATTAGAAAGGCTAGCCATGATCCTCTACGACATCCC
TGATATCCGTCTCTTCTGGTGTGAGGACGAGCGCTTCCTGAAGCAGTTCTGTGTATCCAACATTAATCAG
AAGGTGAAGTTTCAGCCTCTTAGCAAATATCCGGCTGTGATCAATGATATTTCATTCTGGTTGCCCTCTG
AGAATTACGCAGAAAATGATTTCTATGACTTAGTCCGAACAATTGGAGGAGACCTGGTGGAAAAGGTTGA
TCTCATAGACAAGTTTGTACATCCAAAGACGCACAAGACCAGCCACTGCTACCGCATCACGTACCGCCAC
ATGGAACGGACTCTGTCCCAGAGAGAGGTCAGGCACATCCACCAGGCCTTGCAGGAGGCTGCAGTCCAGC
TGTTGGGTGTGGAGGGCAGGTTCTGA

Translation (451 aa):
MVGSALRRGAHAYVYLVSKASHISRGHQHQAWGSRPPAAECATQRAPGSVVELLGKSYPQDDHSNLTRKV
LTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKK
GDNYYLNRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIK
DGESLQLFEQSSRSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEIN
FHGEWLEVLGCGVMEQQLVNSAGAQDRIGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNINQ
KVKFQPLSKYPAVINDISFWLPSENYAENDFYDLVRTIGGDLVEKVDLIDKFVHPKTHKTSHCYRITYRH
MERTLSQREVRHIHQALQEAAVQLLGVEGRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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