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Report for CCDS53139.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53139.1 Public Mus musculus X Msn 23 108 98 CCDS HistoryNCBI Gene:17698Re-query CCDS DB by CCDS ID:53139.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53139.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117399.1 ENSMUSP00000113071.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117399.1Link to Ensembl Protein Viewer:ENSMUSP00000113071.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117399Re-query CCDS DB by Protein ID:ENSMUSP00000113071
Original member Current member NCBI NM_010833.2 NP_034963.2 Accepted alive Link to Nucleotide Sequence:NM_010833.2Link to Protein Sequence:NP_034963.2Re-query CCDS DB by Nucleotide ID:NM_010833Re-query CCDS DB by Protein ID:NP_034963Link to BLAST:NP_034963.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034963.2 577 P26041 577 100% 0 0

Chromosomal Locations for CCDS 53139.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 96096232 96096243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 96141865 96141948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 96150620 96150715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 96152524 96152798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 96154295 96154378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 96155464 96155610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 96157847 96157943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 96160088 96160251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 96163367 96163497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 96163750 96163910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 96165375 96165467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 96165925 96166149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 96166470 96166634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1734 nt):
ATGCCGAAGACGATCAGTGTGCGTGTCACCACCATGGATGCAGAGCTGGAGTTTGCCATTCAGCCCAACA
CCACTGGCAAGCAGCTGTTTGACCAGGTGGTGAAAACTATTGGTTTGAGGGAAGTTTGGTTCTTTGGTCT
GCAGTACCAGGACACAAAAGCTTTCTCTACTTGGCTGAAACTCAATAAGAAGGTGACTGCACAGGATGTG
CGGAAGGAAAGTCCATTGCTCTTCAAGTTCCGGGCCAAGTTCTACCCAGAGGATGTATCTGAAGAACTGA
TCCAGGATATCACCCAGCGCCTGTTCTTTCTGCAAGTGAAGGAGGGCATTCTCAATGACGACATTTACTG
TCCACCTGAAACTGCGGTCCTGTTGGCTTCTTATGCCGTCCAGTCTAAGTATGGTGACTTCAATAAGGAA
GTGCACAAGTCTGGCTACCTGGCTGGAGATAAGTTGCTTCCCCAAAGAGTCTTGGAGCAGCACAAACTCA
ACAAGGACCAGTGGGAAGAGAGGATCCAGGTGTGGCATGAGGAGCACCGGGGCATGCTCAGGGAGGATGC
TGTCCTGGAATATCTCAAGATTGCTCAAGACCTGGAAATGTATGGTGTGAACTATTTCAGCATCAAGAAC
AAGAAAGGCTCAGAGCTATGGCTGGGCGTGGATGCCTTGGGTCTCAACATCTATGAGCAGAATGACAGAC
TGACTCCTAAGATTGGCTTCCCGTGGAGTGAAATCAGGAATATCTCTTTCAATGATAAGAAATTTGTCAT
CAAGCCCATTGACAAAAAGGCCCCGGACTTTGTGTTCTATGCTCCCCGGCTTCGGATTAACAAGCGGATC
TTGGCCCTGTGCATGGGAAATCATGAGCTGTACATGCGTCGGCGCAAGCCTGACACCATTGAGGTGCAGC
AGATGAAGGCCCAGGCTCGGGAAGAGAAGCACCAGAAGCAGATGGAGCGTGCTCTCCTGGAAAATGAGAA
GAAGAAGCGTGAGCTGGCTGAGAAAGAGAAGGAGAAGATTGAGCGGGAGAAGGAAGAGCTGATGGAGAAG
CTGAAGCAGATTGAGGAGCAGACTAAGAAGGCTCAGCAAGAGCTGGAAGAGCAGACCCGCAGGGCCCTAG
AACTTGAGCAGGAACGGAAGCGTGCCCAGAGTGAGGCCGAAAAGCTAGCCAAGGAGCGTCAAGAAGCTGA
AGAAGCCAAAGAGGCCCTGCTGCAGGCTTCTCGGGACCAGAAGAAGACCCAGGAACAGCTGGCTTCAGAA
ATGGCAGAGCTGACGGCACGGATCTCCCAGTTGGAAATGGCTCGAAAGAAGAAGGAAAGTGAGGCTGTGG
AATGGCAGCAAAAGGCCCAGATGGTACAGGAAGACTTGGAGAAGACTCGTGCTGAGCTGAAGACTGCCAT
GAGTACACCTCATGTGGCAGAGCCTGCTGAGAATGAACATGATGAGCAGGATGAGAATGGAGCAGAGGCC
AGTGCCGAGCTGCGGGCTGATGCTATGGCCAAGGACCGCAGTGAGGAGGAACGTACCACTGAGGCAGAGA
AGAATGAGCGTGTGCAGAAGCATCTGAAGGCCCTTACTTCAGAGCTGGCCAATGCCCGAGATGAGTCCAA
GAAGACTGCCAATGACATGATCCATGCTGAGAACATGCGACTGGGACGAGACAAATACAAGACCCTGCGC
CAGATCCGGCAGGGCAACACCAAACAACGCATTGATGAGTTTGAGTCCATGTAG

Translation (577 aa):
MPKTISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKAFSTWLKLNKKVTAQDV
RKESPLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKE
VHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKN
KKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRI
LALCMGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQMERALLENEKKKRELAEKEKEKIEREKEELMEK
LKQIEEQTKKAQQELEEQTRRALELEQERKRAQSEAEKLAKERQEAEEAKEALLQASRDQKKTQEQLASE
MAELTARISQLEMARKKKESEAVEWQQKAQMVQEDLEKTRAELKTAMSTPHVAEPAENEHDEQDENGAEA
SAELRADAMAKDRSEEERTTEAEKNERVQKHLKALTSELANARDESKKTANDMIHAENMRLGRDKYKTLR
QIRQGNTKQRIDEFESM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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