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Report for CCDS1838.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
1838.1 |
Public |
Homo sapiens |
2 |
FOXN2 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:3344](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:1838.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:3344](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 1838.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000340553.8 |
ENSP00000343633.3 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000340553.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000343633.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000340553](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000343633](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001375442.1 |
NP_001362371.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001375442.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001362371.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001375442](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001362371](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001362371.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001375443.1 |
NP_001362372.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001375443.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001362372.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001375443](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001362372](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001362372.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001375444.1 |
NP_001362373.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001375444.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001362373.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001375444](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001362373](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001362373.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001375445.1 |
NP_001362374.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001375445.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001362374.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001375445](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001362374](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001362374.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001375446.1 |
NP_001362375.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001375446.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001362375.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001375446](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001362375](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001362375.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001375447.1 |
NP_001362376.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001375447.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001362376.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001375447](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001362376](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001362376.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001375448.1 |
NP_001362377.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001375448.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001362377.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001375448](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001362377](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001362377.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001375449.1 |
NP_001362378.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001375449.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001362378.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001375449](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001362378](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001362378.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001375450.1 |
NP_001362379.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001375450.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001362379.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001375450](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001362379](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001362379.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001375451.1 |
NP_001362380.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001375451.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001362380.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001375451](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001362380](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001362380.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001375452.1 |
NP_001362381.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001375452.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001362381.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001375452](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001362381](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001362381.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_002158.4 |
NP_002149.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_002158.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_002149.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_002158](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_002149](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_002149.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 1838.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1296 nt): ATGGGTCCAGTAATTGGAATGACTCCAGATAAGAGAGCTGAAACCCCAGGAGCTGAAAAGATTGCAGGAT TAAGCCAGATTTACAAAATGGGAAGCTTGCCTGAAGCTGTTGATGCTGCCAGGCCGAAGGCCACTCTAGT GGACAGTGAGTCAGCAGATGATGAACTCACAAACTTGAACTGGCTTCATGAAAGCACTAATCTTCTAACA AACTTCAGCCTCGGAAGTGAGGGTCTTCCAATTGTTAGTCCATTGTATGACATAGAGGGAGATGATGTGC CATCCTTTGGACCAGCTTGCTACCAGAACCCAGAAAAAAAATCAGCGACTTCAAAGCCCCCATACTCCTT TAGTCTTCTCATTTATATGGCCATTGAGCACTCTCCAAATAAATGTTTGCCTGTCAAAGAAATTTATAGC TGGATTCTGGACCATTTTCCATATTTTGCTACTGCACCAACAGGCTGGAAGAATTCTGTTCGACATAATC TGTCCCTGAATAAATGTTTTCAGAAAGTGGAAAGAAGCCATGGCAAGGTTAATGGAAAAGGTTCCTTATG GTGTGTTGATCCGGAATATAAACCCAATCTTATCCAGGCACTGAAGAAGCAACCTTTTTCTTCAGCATCT TCACAAAATGGTTCTTTATCACCTCACTATTTAAGCTCTGTAATCAAGCAGAACCAGGTGCGAAACCTCA AAGAATCTGATATTGATGCTGCTGCTGCAATGATGCTTTTAAATACTTCTATAGAACAAGGAATTTTAGA ATGTGAGAAGCCTCTTCCTCTTAAAACAGCATTGCAAAAAAAGAGGAGTTACGGCAATGCATTTCATCAT CCCAGTGCTGTACGATTACAAGAGAGTGATTCTTTAGCCACCAGCATTGATCCAAAAGAAGATCACAATT ACAGTGCAAGTAGCATGGCAGCACAGCGTTGTGCATCCAGGTCTAGCGTGTCTTCCCTGTCTTCTGTGGA TGAGGTATATGAATTTATCCCAAAGAATAGTCACGTGGGAAGTGATGGCAGTGAAGGATTTCACAGTGAA GAAGATACAGACGTTGATTATGAAGATGATCCTCTTGGAGACAGTGGCTATGCATCACAGCCTTGTGCAA AAATCTCTGAAAAAGGGCAGTCAGGCAAAAAGATGCGAAAACAGACATGTCAAGAAATTGATGAGGAGCT CAAAGAGGCAGCTGGATCTCTGCTCCACCTTGCTGGAATTCGTACATGTTTAGGTTCCCTAATAAGTACT GCAAAGACACAAAATCAAAAGCAACGGAAAAAATAG
Translation (431 aa): MGPVIGMTPDKRAETPGAEKIAGLSQIYKMGSLPEAVDAARPKATLVDSESADDELTNLNWLHESTNLLT NFSLGSEGLPIVSPLYDIEGDDVPSFGPACYQNPEKKSATSKPPYSFSLLIYMAIEHSPNKCLPVKEIYS WILDHFPYFATAPTGWKNSVRHNLSLNKCFQKVERSHGKVNGKGSLWCVDPEYKPNLIQALKKQPFSSAS SQNGSLSPHYLSSVIKQNQVRNLKESDIDAAAAMMLLNTSIEQGILECEKPLPLKTALQKKRSYGNAFHH PSAVRLQESDSLATSIDPKEDHNYSASSMAAQRCASRSSVSSLSSVDEVYEFIPKNSHVGSDGSEGFHSE EDTDVDYEDDPLGDSGYASQPCAKISEKGQSGKKMRKQTCQEIDEELKEAAGSLLHLAGIRTCLGSLIST AKTQNQKQRKK
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