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Report for CCDS8250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8250.1 Public Homo sapiens 11 PAK1 24 110 108 CCDS HistoryNCBI Gene:5058Re-query CCDS DB by CCDS ID:8250.1Re-query CCDS DB by GeneID:5058See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8250.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356341.8 ENSP00000348696.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356341.8Link to Ensembl Protein Viewer:ENSP00000348696.4Re-query CCDS DB by Nucleotide ID:ENST00000356341Re-query CCDS DB by Protein ID:ENSP00000348696
Original member Current member NCBI NM_001376273.1 NP_001363202.1 Accepted alive Link to Nucleotide Sequence:NM_001376273.1Link to Protein Sequence:NP_001363202.1Re-query CCDS DB by Nucleotide ID:NM_001376273Re-query CCDS DB by Protein ID:NP_001363202Link to BLAST:NP_001363202.1
Original member Current member NCBI NM_001376274.1 NP_001363203.1 Accepted alive Link to Nucleotide Sequence:NM_001376274.1Link to Protein Sequence:NP_001363203.1Re-query CCDS DB by Nucleotide ID:NM_001376274Re-query CCDS DB by Protein ID:NP_001363203Link to BLAST:NP_001363203.1
Original member Current member NCBI NM_001376275.1 NP_001363204.1 Accepted alive Link to Nucleotide Sequence:NM_001376275.1Link to Protein Sequence:NP_001363204.1Re-query CCDS DB by Nucleotide ID:NM_001376275Re-query CCDS DB by Protein ID:NP_001363204Link to BLAST:NP_001363204.1
Original member Current member NCBI NM_001376276.1 NP_001363205.1 Accepted alive Link to Nucleotide Sequence:NM_001376276.1Link to Protein Sequence:NP_001363205.1Re-query CCDS DB by Nucleotide ID:NM_001376276Re-query CCDS DB by Protein ID:NP_001363205Link to BLAST:NP_001363205.1
Original member Current member NCBI NM_001376277.1 NP_001363206.1 Accepted alive Link to Nucleotide Sequence:NM_001376277.1Link to Protein Sequence:NP_001363206.1Re-query CCDS DB by Nucleotide ID:NM_001376277Re-query CCDS DB by Protein ID:NP_001363206Link to BLAST:NP_001363206.1
Original member Current member NCBI NM_001376278.1 NP_001363207.1 Accepted alive Link to Nucleotide Sequence:NM_001376278.1Link to Protein Sequence:NP_001363207.1Re-query CCDS DB by Nucleotide ID:NM_001376278Re-query CCDS DB by Protein ID:NP_001363207Link to BLAST:NP_001363207.1
Original member Current member NCBI NM_001376279.1 NP_001363208.1 Accepted alive Link to Nucleotide Sequence:NM_001376279.1Link to Protein Sequence:NP_001363208.1Re-query CCDS DB by Nucleotide ID:NM_001376279Re-query CCDS DB by Protein ID:NP_001363208Link to BLAST:NP_001363208.1
Original member Current member NCBI NM_001376280.1 NP_001363209.1 Accepted alive Link to Nucleotide Sequence:NM_001376280.1Link to Protein Sequence:NP_001363209.1Re-query CCDS DB by Nucleotide ID:NM_001376280Re-query CCDS DB by Protein ID:NP_001363209Link to BLAST:NP_001363209.1
Original member Current member NCBI NM_001376281.1 NP_001363210.1 Accepted alive Link to Nucleotide Sequence:NM_001376281.1Link to Protein Sequence:NP_001363210.1Re-query CCDS DB by Nucleotide ID:NM_001376281Re-query CCDS DB by Protein ID:NP_001363210Link to BLAST:NP_001363210.1
Original member Current member NCBI NM_001376282.1 NP_001363211.1 Accepted alive Link to Nucleotide Sequence:NM_001376282.1Link to Protein Sequence:NP_001363211.1Re-query CCDS DB by Nucleotide ID:NM_001376282Re-query CCDS DB by Protein ID:NP_001363211Link to BLAST:NP_001363211.1
Original member Current member NCBI NM_001376283.1 NP_001363212.1 Accepted alive Link to Nucleotide Sequence:NM_001376283.1Link to Protein Sequence:NP_001363212.1Re-query CCDS DB by Nucleotide ID:NM_001376283Re-query CCDS DB by Protein ID:NP_001363212Link to BLAST:NP_001363212.1
Original member Current member NCBI NM_001376284.1 NP_001363213.1 Accepted alive Link to Nucleotide Sequence:NM_001376284.1Link to Protein Sequence:NP_001363213.1Re-query CCDS DB by Nucleotide ID:NM_001376284Re-query CCDS DB by Protein ID:NP_001363213Link to BLAST:NP_001363213.1
Original member Current member NCBI NM_001376285.1 NP_001363214.1 Accepted alive Link to Nucleotide Sequence:NM_001376285.1Link to Protein Sequence:NP_001363214.1Re-query CCDS DB by Nucleotide ID:NM_001376285Re-query CCDS DB by Protein ID:NP_001363214Link to BLAST:NP_001363214.1
Original member Current member NCBI NM_001376286.1 NP_001363215.1 Accepted alive Link to Nucleotide Sequence:NM_001376286.1Link to Protein Sequence:NP_001363215.1Re-query CCDS DB by Nucleotide ID:NM_001376286Re-query CCDS DB by Protein ID:NP_001363215Link to BLAST:NP_001363215.1
Original member Current member NCBI NM_001376287.1 NP_001363216.1 Accepted alive Link to Nucleotide Sequence:NM_001376287.1Link to Protein Sequence:NP_001363216.1Re-query CCDS DB by Nucleotide ID:NM_001376287Re-query CCDS DB by Protein ID:NP_001363216Link to BLAST:NP_001363216.1
Original member Current member NCBI NM_002576.5 NP_002567.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002576.5Link to Protein Sequence:NP_002567.3Re-query CCDS DB by Nucleotide ID:NM_002576Re-query CCDS DB by Protein ID:NP_002567Link to BLAST:NP_002567.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001363202.1 545 Q13153-1 545 100% 0 0
NP_001363203.1 545 Q13153-1 545 100% 0 0
NP_001363204.1 545 Q13153-1 545 100% 0 0
NP_001363205.1 545 Q13153-1 545 100% 0 0
NP_001363206.1 545 Q13153-1 545 100% 0 0
NP_001363207.1 545 Q13153-1 545 100% 0 0
NP_001363208.1 545 Q13153-1 545 100% 0 0
NP_001363209.1 545 Q13153-1 545 100% 0 0
NP_001363210.1 545 Q13153-1 545 100% 0 0
NP_001363211.1 545 Q13153-1 545 100% 0 0
NP_001363212.1 545 Q13153-1 545 100% 0 0
NP_001363213.1 545 Q13153-1 545 100% 0 0
NP_001363214.1 545 Q13153-1 545 100% 0 0
NP_001363215.1 545 Q13153-1 545 100% 0 0
NP_001363216.1 545 Q13153-1 545 100% 0 0
NP_002567.3 545 Q13153-1 545 100% 0 0

Chromosomal Locations for CCDS 8250.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 77323274 77323360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77332730 77332867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77336086 77336282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77337324 77337423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77340646 77340763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77343819 77343931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77349239 77349287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77353536 77353599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77355668 77355842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77358898 77359017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77374328 77374365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77379241 77379388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77379894 77379994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77392331 77392520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1638 nt):
ATGTCAAATAACGGCCTAGACATTCAAGACAAACCCCCAGCCCCTCCGATGAGAAATACCAGCACTATGA
TTGGAGCCGGCAGCAAAGATGCTGGAACCCTAAACCATGGTTCTAAACCTCTGCCTCCAAACCCAGAGGA
GAAGAAAAAGAAGGACCGATTTTACCGATCCATTTTACCTGGAGATAAAACAAATAAAAAGAAAGAGAAA
GAGCGGCCAGAGATTTCTCTCCCTTCAGATTTTGAACACACAATTCATGTCGGTTTTGATGCTGTCACAG
GGGAGTTTACGGGAATGCCAGAGCAGTGGGCCCGCTTGCTTCAGACATCAAATATCACTAAGTCGGAGCA
GAAGAAAAACCCGCAGGCTGTTCTGGATGTGTTGGAGTTTTACAACTCGAAGAAGACATCCAACAGCCAG
AAATACATGAGCTTTACAGATAAGTCAGCTGAGGATTACAATTCTTCTAATGCCTTGAATGTGAAGGCTG
TGTCTGAGACTCCTGCAGTGCCACCAGTTTCAGAAGATGAGGATGATGATGATGATGATGCTACCCCACC
ACCAGTGATTGCTCCACGCCCAGAGCACACAAAATCTGTATACACACGGTCTGTGATTGAACCACTTCCT
GTCACTCCAACTCGGGACGTGGCTACATCTCCCATTTCACCTACTGAAAATAACACCACTCCACCAGATG
CTTTGACCCGGAATACTGAGAAGCAGAAGAAGAAGCCTAAAATGTCTGATGAGGAGATCTTGGAGAAATT
ACGAAGCATAGTGAGTGTGGGCGATCCTAAGAAGAAATATACACGGTTTGAGAAGATTGGACAAGGTGCT
TCAGGCACCGTGTACACAGCAATGGATGTGGCCACAGGACAGGAGGTGGCCATTAAGCAGATGAATCTTC
AGCAGCAGCCCAAGAAAGAGCTGATTATTAATGAGATCCTGGTCATGAGGGAAAACAAGAACCCAAACAT
TGTGAATTACTTGGACAGTTACCTCGTGGGAGATGAGCTGTGGGTTGTTATGGAATACTTGGCTGGAGGC
TCCTTGACAGATGTGGTGACAGAAACTTGCATGGATGAAGGCCAAATTGCAGCTGTGTGCCGTGAGTGTC
TGCAGGCTCTGGAGTTCTTGCATTCGAACCAGGTCATTCACAGAGACATCAAGAGTGACAATATTCTGTT
GGGAATGGATGGCTCTGTCAAGCTAACTGACTTTGGATTCTGTGCACAGATAACCCCAGAGCAGAGCAAA
CGGAGCACCATGGTAGGAACCCCATACTGGATGGCACCAGAGGTTGTGACACGAAAGGCCTATGGGCCCA
AGGTTGACATCTGGTCCCTGGGCATCATGGCCATCGAAATGATTGAAGGGGAGCCTCCATACCTCAATGA
AAACCCTCTGAGAGCCTTGTACCTCATTGCCACCAATGGGACCCCAGAACTTCAGAACCCAGAGAAGCTG
TCAGCTATCTTCCGGGACTTTCTGAACCGCTGTCTCGAGATGGATGTGGAGAAGAGAGGTTCAGCTAAAG
AGCTGCTACAGCATCAATTCCTGAAGATTGCCAAGCCCCTCTCCAGCCTCACTCCACTGATTGCTGCAGC
TAAGGAGGCAACAAAGAACAATCACTAA

Translation (545 aa):
MSNNGLDIQDKPPAPPMRNTSTMIGAGSKDAGTLNHGSKPLPPNPEEKKKKDRFYRSILPGDKTNKKKEK
ERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKNPQAVLDVLEFYNSKKTSNSQ
KYMSFTDKSAEDYNSSNALNVKAVSETPAVPPVSEDEDDDDDDATPPPVIAPRPEHTKSVYTRSVIEPLP
VTPTRDVATSPISPTENNTTPPDALTRNTEKQKKKPKMSDEEILEKLRSIVSVGDPKKKYTRFEKIGQGA
SGTVYTAMDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGG
SLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK
RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKL
SAIFRDFLNRCLEMDVEKRGSAKELLQHQFLKIAKPLSSLTPLIAAAKEATKNNH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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