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Report for CCDS9106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9106.1 Public Homo sapiens 12 RFX4 24 110 108 CCDS HistoryNCBI Gene:5992Re-query CCDS DB by CCDS ID:9106.1Re-query CCDS DB by GeneID:5992See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9106.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392842.6 ENSP00000376585.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392842.6Link to Ensembl Protein Viewer:ENSP00000376585.1Re-query CCDS DB by Nucleotide ID:ENST00000392842Re-query CCDS DB by Protein ID:ENSP00000376585
Original member Current member NCBI NM_213594.3 NP_998759.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_213594.3Link to Protein Sequence:NP_998759.1Re-query CCDS DB by Nucleotide ID:NM_213594Re-query CCDS DB by Protein ID:NP_998759Link to BLAST:NP_998759.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_998759.1 735 Q33E94-1 735 100% 0 0

Chromosomal Locations for CCDS 9106.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 106583321 106583363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106608797 106608883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106639332 106639392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106654228 106654351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106681993 106682054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106686884 106687097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106689287 106689364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106696283 106696446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106709330 106709430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106711453 106711511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106715400 106715544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106719960 106720054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106720759 106720876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106732130 106732249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106732924 106733085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106747437 106747599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106750655 106750793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106761197 106761469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2208 nt):
ATGCATTGTGGGTTACTGGAGGAACCCGACATGGATTCCACAGAGAGCTGGATTGAAAGATGTCTCAACG
AAAGTGAAAACAAACGTTATTCCAGCCACACATCTCTGGGGAATGTTTCTAATGATGAAAATGAGGAAAA
AGAAAATAATAGAGCATCCAAGCCCCACTCCACTCCTGCTACTCTGCAATGGCTGGAGGAGAACTATGAG
ATTGCAGAGGGGGTCTGCATCCCTCGCAGTGCCCTCTATATGCATTACCTGGATTTCTGCGAGAAGAATG
ATACCCAACCTGTCAATGCTGCCAGCTTTGGAAAGATCATAAGGCAGCAGTTTCCTCAGTTAACCACCAG
AAGACTCGGGACCCGAGGACAGTCAAAGTACCATTACTATGGCATTGCAGTGAAAGAAAGCTCCCAATAT
TATGATGTGATGTATTCCAAGAAAGGAGCTGCCTGGGTGAGTGAGACGGGCAAGAAAGAAGTGAGCAAAC
AGACAGTGGCATATTCACCCCGGTCCAAACTCGGAACACTGCTGCCAGAATTTCCCAATGTCAAAGATCT
AAATCTGCCAGCCAGCCTGCCTGAGGAGAAGGTTTCTACCTTTATTATGATGTACAGAACACACTGTCAG
AGAATACTGGACACTGTAATAAGAGCCAACTTTGATGAGGTTCAAAGTTTCCTTCTGCACTTTTGGCAAG
GAATGCCGCCCCACATGCTGCCTGTGCTGGGCTCCTCCACGGTGGTGAACATTGTCGGCGTGTGTGACTC
CATCCTCTACAAAGCTATCTCCGGGGTGCTGATGCCCACTGTGCTGCAGGCATTACCTGACAGCTTAACT
CAGGTGATTCGAAAGTTTGCCAAGCAACTGGATGAGTGGCTAAAAGTGGCTCTCCACGACCTCCCAGAAA
ACTTGCGAAACATCAAGTTCGAATTGTCGAGAAGGTTCTCCCAAATTCTGAGACGGCAAACATCACTAAA
TCATCTCTGCCAGGCATCTCGAACAGTGATCCACAGTGCAGACATCACGTTCCAAATGCTGGAAGACTGG
AGGAACGTGGACCTGAACAGCATCACCAAGCAAACCCTTTACACCATGGAAGACTCTCGCGATGAGCACC
GGAAACTCATCACCCAATTATATCAGGAGTTTGACCATCTCTTGGAGGAGCAGTCTCCCATCGAGTCCTA
CATTGAGTGGCTGGATACCATGGTTGACCGCTGTGTTGTGAAGGTGGCTGCCAAGAGACAAGGGTCCTTG
AAGAAAGTGGCCCAGCAGTTCCTCTTGATGTGGTCCTGTTTCGGCACAAGGGTGATCCGGGACATGACCT
TGCACAGCGCCCCCAGCTTCGGGTCTTTTCACCTAATTCACTTAATGTTTGATGACTACGTGCTCTACCT
GTTAGAATCTCTGCACTGTCAGGAGCGGGCCAATGAGCTCATGCGAGCCATGAAGGGAGAAGGAAGCACT
GCAGAAGTCCGAGAAGAGATCATCTTGACAGAGGCTGCCGCACCAACCCCTTCACCAGTGCCATCGTTTT
CTCCAGCAAAATCTGCCACATCTGTGGAAGTGCCACCTCCCTCTTCCCCTGTTAGCAATCCTTCCCCTGA
GTACACTGGCCTCAGCACTACAGGAGCAATGCAGTCTTACACGTGGTCTCTAACATACACAGTGACGACG
GCTGCTGGGTCCCCAGCTGAGAACTCCCAACAGCTGCCCTGTATGAGGAACACTCATGTGCCTTCTTCCT
CCGTCACACACAGGATACCAGTTTATCCCCACAGAGAGGAACATGGATACACGGGAAGCTATAACTATGG
GAGCTATGGCAACCAGCATCCTCACCCCATGCAGAGCCAGTATCCGGCCCTCCCTCATGACACAGCTATC
TCTGGGCCACTCCACTATGCCCCTTACCACAGGAGCTCTGCACAGTACCCTTTTAATAGCCCCACTTCCC
GGATGGAACCTTGTTTGATGAGCAGTACTCCCAGACTGCATCCTACCCCAGTCACTCCCCGCTGGCCAGA
GGTGCCCTCAGCCAACACGTGCTACACAAGCCCGTCTGTGCATTCTGCGAGGTACGGAAACTCTAGTGAC
ATGTATACACCTCTGACAACGCGCAGGAATTCTGAATATGAGCACATGCAACACTTTCCTGGCTTTGCTT
ACATCAACGGAGAGGCCTCTACAGGATGGGCTAAATGA

Translation (735 aa):
MHCGLLEEPDMDSTESWIERCLNESENKRYSSHTSLGNVSNDENEEKENNRASKPHSTPATLQWLEENYE
IAEGVCIPRSALYMHYLDFCEKNDTQPVNAASFGKIIRQQFPQLTTRRLGTRGQSKYHYYGIAVKESSQY
YDVMYSKKGAAWVSETGKKEVSKQTVAYSPRSKLGTLLPEFPNVKDLNLPASLPEEKVSTFIMMYRTHCQ
RILDTVIRANFDEVQSFLLHFWQGMPPHMLPVLGSSTVVNIVGVCDSILYKAISGVLMPTVLQALPDSLT
QVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRFSQILRRQTSLNHLCQASRTVIHSADITFQMLEDW
RNVDLNSITKQTLYTMEDSRDEHRKLITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSL
KKVAQQFLLMWSCFGTRVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLESLHCQERANELMRAMKGEGST
AEVREEIILTEAAAPTPSPVPSFSPAKSATSVEVPPPSSPVSNPSPEYTGLSTTGAMQSYTWSLTYTVTT
AAGSPAENSQQLPCMRNTHVPSSSVTHRIPVYPHREEHGYTGSYNYGSYGNQHPHPMQSQYPALPHDTAI
SGPLHYAPYHRSSAQYPFNSPTSRMEPCLMSSTPRLHPTPVTPRWPEVPSANTCYTSPSVHSARYGNSSD
MYTPLTTRRNSEYEHMQHFPGFAYINGEASTGWAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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