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Report for CCDS4627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4627.1 Public Homo sapiens 6 H3C10 24 110 108 CCDS HistoryNCBI Gene:8357Re-query CCDS DB by CCDS ID:4627.1Re-query CCDS DB by GeneID:8357See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4627.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369163.4 ENSP00000358160.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369163.4Link to Ensembl Protein Viewer:ENSP00000358160.2Re-query CCDS DB by Nucleotide ID:ENST00000369163Re-query CCDS DB by Protein ID:ENSP00000358160
Original member Current member EBI ENST00000685041.1 ENSP00000509120.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000685041.1Link to Ensembl Protein Viewer:ENSP00000509120.1Re-query CCDS DB by Nucleotide ID:ENST00000685041Re-query CCDS DB by Protein ID:ENSP00000509120
Original member Current member NCBI NM_003536.3 NP_003527.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003536.3Link to Protein Sequence:NP_003527.1Re-query CCDS DB by Nucleotide ID:NM_003536Re-query CCDS DB by Protein ID:NP_003527Link to BLAST:NP_003527.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003527.1 136 P68431 136 100% 0 0

Chromosomal Locations for CCDS 4627.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 27810074 27810484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGGCGCGTACGAAGCAGACTGCTCGCAAGTCCACCGGCGGCAAGGCTCCGCGCAAGCAGCTGGCCACCA
AGGCGGCTCGGAAGAGCGCTCCGGCCACCGGCGGTGTCAAGAAGCCCCATCGCTATCGGCCTGGTACAGT
GGCTCTCCGCGAGATTCGCCGCTACCAGAAGTCCACCGAGCTGCTGATCAGAAAGCTGCCTTTTCAGCGT
CTGGTGCGTGAGATCGCGCAGGACTTCAAGACCGACTTGCGCTTCCAGAGCTCCGCGGTGATGGCGCTGC
AAGAGGCATGCGAGGCCTACCTGGTGGGGCTCTTTGAGGACACCAACCTGTGCGCCATCCACGCCAAGCG
GGTGACTATCATGCCCAAGGACATCCAGCTCGCACGTCGTATCCGCGGCGAGAGGGCTTGA

Translation (136 aa):
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR
LVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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