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Report for CCDS24123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24123.1 Public Mus musculus 10 Nedd1 23 108 98 CCDS HistoryNCBI Gene:17997Re-query CCDS DB by CCDS ID:24123.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24123.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020163.6 ENSMUSP00000020163.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020163.6Link to Ensembl Protein Viewer:ENSMUSP00000020163.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020163Re-query CCDS DB by Protein ID:ENSMUSP00000020163
Original member Current member NCBI NM_008682.2 NP_032708.2 Accepted alive Link to Nucleotide Sequence:NM_008682.2Link to Protein Sequence:NP_032708.2Re-query CCDS DB by Nucleotide ID:NM_008682Re-query CCDS DB by Protein ID:NP_032708Link to BLAST:NP_032708.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032708.2 660 P33215-1 660 100% 0 0

Chromosomal Locations for CCDS 24123.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 92686191 92686295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92686720 92686786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92689635 92689791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92690628 92690784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92691834 92692036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92692888 92692935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92694980 92695108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92698170 92698365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92698726 92698927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92700720 92700949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92711171 92711311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92714074 92714190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92716166 92716260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92719486 92719621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1983 nt):
ATGCAGGAAAACCTCAGATTTGCTTCATCAGGAGATGACGTTAAAATATGGGATGCTTCGTTCCTGACAT
TGGTGGATAAATTCAACCCTCACACGTCACCGCATGGAATCAGTTCAATCTGTTGGAGCAGCAATAATAA
CTTTCTAGTGACAGCTTCTTCCAGTGGTGACAAAATAGTGGTGTCAAGTTGCAAATGTAAGCCCGTTCCA
CTTTTGGAGCTTGCGGAAGGGCAAAAGCAGACATGTGTCGATTTAAATTCTACATCAATGTATTTGGCAA
GTGGAGGCCTAAATAACACTGTTAATATTTGGGATTTAAAGTCCAAACGACTTCATCGGTCTCTTAAGGA
TCATAAATGTGAAGTAACTTGTGTGGCATACAATTGGAATGACTGTTACATTGCTTCTGGGTCTCTCAGT
GGTGAGATTATCTTACACAGTGTAACCACTAATACATCCAGCACACCTTTTGGCCATGGGAGTAAGCAGC
CTATCCGGCACATCAAGTACTCATTGTTTAGGAAGTCTCTCTTGGGCAGCGTTTCGGATAATGGAGTAGT
GACTCTCTGGGATGTGAACAGTCAGAGTTCATACCACACCTTTGACAGTACACACAAAGCCCCAGCTTCA
GGCATCTGCTTCTCTCCTGTCAATGAACTGCTGTTTGTAACCATAGGCCTGGATAAAAGAATCATCCTCT
ATGATACTTCAAGTAAGAAGCTAGTGAAAACTTTAGTGGCCGACACCCCCCTGACTGCAGTAGATTTTAT
GCCGGATGGAGCCACTTTGGCTATTGGATCTTCCCGTGGGAAAATATATCAGTATGACTTAAGGATGCTG
AAATCTCCCGTGAAAACCATCAGTGCCCACAAGACATCTGTGCAGTGTATAGCATTTCAGTACTCCACAT
CTCTGACGAAGGCAAGTTTAAGCAAAGGCAGCTCAAATAAGGCCACAGCAGTGAACAAACGGAGTGTTCC
TGTGAGCAGCAGCAGTGGGGCTGCCCAGAATTCTGGAATTGTCAGAGAAGCACCCAGCCCTTCCATTGCC
ACAGTTCTCCCACAGCCCGTGACAACAGCTCTGGGCAAAGGATCAGGGGCTGCTCAGGACGAAGCAGGTT
TGGCTCGAAGCAAAAGTACAGATATTTTCTCTAAGGAAACAGATGCTGGAAAAAGTCAGGATTTCTCCAG
CTTTGATGATACTGGGAAAAATAGTTTAGGTGACATGTTCTCACCAATCAGAGATGATGCTGTAGTCAGC
AAAGGAGGTGATGAATCTATAGGCAAAGGAGATGGCCTTGACTTTCTACCACAGCTAAACTCAGTGTTCC
CTCTGAGGAAGAATGCAGGTGCCTCCAGCAGTCTGGTGCTGCACTCCAGCCCTCTTAATGTCCTCATGGG
ATCTTCAGGGAAAGAAGAGAATGAAAGCCATGAGCCGTCAGCTGAGTCTAAAAGAGCATACCTAGGGAAG
CAGGAACCTAAGGACGCCATGAAGCAGTTTACAAAGTTGATCTCCTCTGGTGCTGAACCTGGAATTCTAA
ATACCTGTCCATCGTCTAACCAAGCAAGAAATCTTGAAAAATTTGAAAAGCCAGAAAAAGATATTGAAGC
CCAGTTGATACATGAACCCTCAGTCAACGGCTCCTCAACTACAGTACCAAAGGCAGCATCCTCCGTCACT
GCTGGAGTGGCCAGTTCACTCTCAGAGAAAATAGTCGATACCCTTGGGAACAGTCGGCCAGGGGCGCCGC
TTACCTCAGTCCAGATCCGCTTCATTCAGAACATGATACAAGAAACACTGGATGACTTCAGGGAAGCTTG
CCATAGAGACATTGTGAATCTGCAAGTGGAAATGATTAAACAGTTTCATATACAGCTGAATGAAATGCAC
TCTTTGCTGGAAAGATACTCCGTGAATGAAGGCTTAGTGGCTGAGATCGAAAGGCTGCGAGAAGAAAACA
AAAGGCTGCGGGCCCATTTCTGA

Translation (660 aa):
MQENLRFASSGDDVKIWDASFLTLVDKFNPHTSPHGISSICWSSNNNFLVTASSSGDKIVVSSCKCKPVP
LLELAEGQKQTCVDLNSTSMYLASGGLNNTVNIWDLKSKRLHRSLKDHKCEVTCVAYNWNDCYIASGSLS
GEIILHSVTTNTSSTPFGHGSKQPIRHIKYSLFRKSLLGSVSDNGVVTLWDVNSQSSYHTFDSTHKAPAS
GICFSPVNELLFVTIGLDKRIILYDTSSKKLVKTLVADTPLTAVDFMPDGATLAIGSSRGKIYQYDLRML
KSPVKTISAHKTSVQCIAFQYSTSLTKASLSKGSSNKATAVNKRSVPVSSSSGAAQNSGIVREAPSPSIA
TVLPQPVTTALGKGSGAAQDEAGLARSKSTDIFSKETDAGKSQDFSSFDDTGKNSLGDMFSPIRDDAVVS
KGGDESIGKGDGLDFLPQLNSVFPLRKNAGASSSLVLHSSPLNVLMGSSGKEENESHEPSAESKRAYLGK
QEPKDAMKQFTKLISSGAEPGILNTCPSSNQARNLEKFEKPEKDIEAQLIHEPSVNGSSTTVPKAASSVT
AGVASSLSEKIVDTLGNSRPGAPLTSVQIRFIQNMIQETLDDFREACHRDIVNLQVEMIKQFHIQLNEMH
SLLERYSVNEGLVAEIERLREENKRLRAHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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