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Report for CCDS20134.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20134.1 Public Mus musculus 6 Nfe2l3 23 108 98 CCDS HistoryNCBI Gene:18025Re-query CCDS DB by CCDS ID:20134.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20134.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005103.11 ENSMUSP00000005103.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005103.11Link to Ensembl Protein Viewer:ENSMUSP00000005103.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000005103Re-query CCDS DB by Protein ID:ENSMUSP00000005103
Original member Current member NCBI NM_010903.2 NP_035033.1 Accepted alive Link to Nucleotide Sequence:NM_010903.2Link to Protein Sequence:NP_035033.1Re-query CCDS DB by Nucleotide ID:NM_010903Re-query CCDS DB by Protein ID:NP_035033Link to BLAST:NP_035033.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035033.1 660 Q9WTM4 660 100% 0 0

Chromosomal Locations for CCDS 20134.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 51432907 51433413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51450967 51451143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51456594 51456677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51457230 51458444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1983 nt):
ATGAAGCTCCCGAAGCCTTGGTGGGCGGGCGGCGGCCTCCTGCAACTCACGATTCTGTTGAGCTTGGTAG
GGCTCCGTGTGGACCTGGACCTCTTCCTGCCGCCGCCGGCCGCCGCACTTTGGGAAGAGCTGCTCCCACT
CTGCCCCACCCGCCCCGCCTCGGCTTCTAACCCCTTCTCGGCTTCGGAAGGCTGGGAACGCACCCCCCTG
CTACCTGCCAAAGGCCGGCTGCTGCACGAAGTGCGCGCGCTCGGGGTCCCCTTCATTCCCCGCACCCGCG
TGGACGCGTGGCTAGTGCACAGCGTGGCGACTGGGAACGCAGACGGGGCCCACGGGCTGCTCGGCACCGC
CGCCTCGTCGGCCGTGGGAGACGGCGGCCAGTCAGCATCCGCGGGCGGCGGGGACCCCCGAGCGGCTCAT
AGCAGCCCTCTGGCCGCTGAGGAAGAGGAGGAGAAGGCGGCCGAACCGACGGCGCAGGTGCCAGATGCAG
GCGGATGCGGGAGCCAGGAGAACGGGATGCTAAGAGAAAAGAGCGAAGCTGTGGATCACAGTTCCCAGCA
GGAGGAAAACGAGGAAGGGGTGTCAGCCCAGGCAAAATCGCGACAGCAGAGTAAGACGGAGGAACACAAA
ATGGCGTGTGCCTCTGCCAGGGAAGCCGAGAAGATCACCGAGGCTAGGAACGAGAGCCATCTACATTGGT
CAGATACATCTTTCTCTTTGGAAGATTTATTCCAACTACTTTCATCACAGCCTGAACATTCTCTGGAGGG
CATCTCAGTGGAAGACATTCCACCTTTTCTGAGCAGTGTCTGTGAAAGTGTTAATTCCTCAGCACAGAAC
ATAAATTTGAGCCAAGCTATAAGCCATGATGTCAATCTTCATGAAGCCATGCTGTTGTACCCCAACAACA
CATTTAGAAGAGATCCATCAGCAAGGTCTTCACAGGCACAAGAACCATTTCTGCAGTTAAATCCTCATAC
AAATCCTGAGCAAGCCACTCCTGCAATGTCTCTTCCACCGTTTGACAATCAAATGAGGAACCTAACAAGC
CAAGATCTCCTGTATGACCTGGATTCAAATATATTTGATGGAATAAACCTAATGTCATTGGCCACAGGTT
TCAGTCCATTGGAAGTTTCTCAACTTTTTGAAGAACCAGATTCCGGGCTCTCATTAAATTCAAGTTACAA
CAGCACCTCTCTCACAAATTCTTACCGTATTTATGATGGGACTGTAGGTTACAATAGCGACCTACAGTCT
CTTTGTCATGATTTAGGTGCTGTAGGAGGCTGCTACCCAGAACCCCATAAACATTGTCATATGGACCATA
GGACTATAGCTGGCTTTCATGTGTCCCTTGAATGTCAGCAAGTATTTCATGACCACACTTACCATTTACA
GTCAGGTGCATCAGAGCCCACATCTGAATCTTTTGCATGGTCTGAGAAGTCGCAGAAAACCAGTGGATGC
CTTGATAACCCAGATAGAAACTTGAGCCGTGATGAACAGCGTGCTAAAGCTCTGCACATTCCCTTTTCTG
TAGATGAAATTGTCCGTATGCCTGTTGACTCTTTCAACAGCATGTTAAGCAGATACTACCTGACAGACTT
ACAAGTGTCTCTCATCCGTGATATCAGGCGAAGAGGAAAAAATAAAGTTGCTGCTCAGAACTGCCGTAAA
CGTAAACTAGACATCATTTTGAATCTAGAGGATGATATATGTAACTTGCAAGCAAAGAAAGAAGCCCTTA
AAAATGAGCAAACTCAATGTAGCAAAGCTATTGACATAATGAGGCAGAAGCTACATGGCCTTCACCAGGA
TGTTTTTAATAGATTAAGAGATGACCAAGGTAGGCCAGTCAATCCAAGCCAATATGCACTTCAGTACAGC
CATGATGGAACTGTTTTGATTGTACCCAAAGAACTCATCTCATCAGGCCACAAAAAGGAAGCCCCAAAGG
GAAAGAGAGAGAGAAGAAACTGA

Translation (660 aa):
MKLPKPWWAGGGLLQLTILLSLVGLRVDLDLFLPPPAAALWEELLPLCPTRPASASNPFSASEGWERTPL
LPAKGRLLHEVRALGVPFIPRTRVDAWLVHSVATGNADGAHGLLGTAASSAVGDGGQSASAGGGDPRAAH
SSPLAAEEEEEKAAEPTAQVPDAGGCGSQENGMLREKSEAVDHSSQQEENEEGVSAQAKSRQQSKTEEHK
MACASAREAEKITEARNESHLHWSDTSFSLEDLFQLLSSQPEHSLEGISVEDIPPFLSSVCESVNSSAQN
INLSQAISHDVNLHEAMLLYPNNTFRRDPSARSSQAQEPFLQLNPHTNPEQATPAMSLPPFDNQMRNLTS
QDLLYDLDSNIFDGINLMSLATGFSPLEVSQLFEEPDSGLSLNSSYNSTSLTNSYRIYDGTVGYNSDLQS
LCHDLGAVGGCYPEPHKHCHMDHRTIAGFHVSLECQQVFHDHTYHLQSGASEPTSESFAWSEKSQKTSGC
LDNPDRNLSRDEQRAKALHIPFSVDEIVRMPVDSFNSMLSRYYLTDLQVSLIRDIRRRGKNKVAAQNCRK
RKLDIILNLEDDICNLQAKKEALKNEQTQCSKAIDIMRQKLHGLHQDVFNRLRDDQGRPVNPSQYALQYS
HDGTVLIVPKELISSGHKKEAPKGKRERRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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