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Report for CCDS92870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92870.1 Public Homo sapiens 2 R3HDM1 24 110 108 CCDS HistoryNCBI Gene:23518Re-query CCDS DB by CCDS ID:92870.1Re-query CCDS DB by GeneID:23518See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92870.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000683871.1 ENSP00000506980.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683871.1Link to Ensembl Protein Viewer:ENSP00000506980.1Re-query CCDS DB by Nucleotide ID:ENST00000683871Re-query CCDS DB by Protein ID:ENSP00000506980
Original member Current member NCBI NM_001378107.1 NP_001365036.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001378107.1Link to Protein Sequence:NP_001365036.1Re-query CCDS DB by Nucleotide ID:NM_001378107Re-query CCDS DB by Protein ID:NP_001365036Link to BLAST:NP_001365036.1

Chromosomal Locations for CCDS 92870.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 135604846 135605016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135616152 135616193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135616668 135616757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135621494 135621608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135622654 135622732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135631718 135631777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135631861 135632001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135635890 135635998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135636088 135636183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135638618 135638655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135638739 135638789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135638896 135639122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135641536 135641790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135645379 135645527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135649902 135650003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135651730 135652032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135661270 135661393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135675332 135675486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135680173 135680324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135709433 135709536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135710059 135710231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135715550 135715694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135721924 135722006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135722469 135722553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135723937 135724292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3405 nt):
ATGAGGATGTCTGATACTGTTACTGTAAAAGATGAAACTGCAACAATGAAGGATTTGGAGGCAGAAGTGA
AA
GATACAACCAGAGTTGAAAATCTTATCAAATCAGAAAACTATGGGAAGATTTTGGTAGAGAAGAATGA
A
CATTGTATTGAGAACAATATAGATTTGCAGCGGCCATTGCAGTCATTTGGACAGACAGGAAAAAGGTCT
AAG
TCAAGCTCAAAGTTAAAGCTAGTTCGGAGCCTTGCAGTGTGTGAAGAATCTCCACCACCCCCTGCAC
CA
GAGATATCACAGGAGAACCAGGAGAAAATTCAGATCCAGTTAACACAATCATTTGAGAAAGAAGAGAA
G
CCCTCAAAAGATGAAGCAGAAAAAGAAAAGGCCAGTGATAAGTTGCCCAGAAAAATGTTATCAAGAGAT
TCC
AGTCAAGAATACACTGATTCAACTGGCATAGATCTACATGAATTTTTAGTAAATACATTAAAAAACA
AT
CCCAGGGACAGAATGATGCTGCTGAAATTGGAACAAGAAATTTTAGATTTCATTGGTAATAATGAGTC
T
CCACGTAAAAAATTCCCCCCAATGACATCTTACCATAGGATGCTATTACACAGAGTAGCCGCTTACTTT
GGA
TTAGACCACAATGTTGATCAGAGTGGGAAGTCTGTCATAGTAAACAAAACTAGCAATACAAGAATAC
CT
GATCAGAAATTTAATGAACATATTAAGGATGATAAAGGTGAAGACTTTCAGAAACGTTATATCCTCAA
G
AGAGATAACTCTAGCTTTGACAAAGATGATAACCAGATGAGAATACGTTTGAAAGATGACAGAAGAAGC
AAA
TCTATAGAAGAAAGAGAAGAAGAGTACCAGAGAGCCAGAGACCGAATATTTTCCCAAGATTCCCTGT
GT
TCCCAAGAGAATTACATTATTGACAAAAGACTCCAAGACGAGGATGCCAGTAGTACCCAGCAGAGGCG
C
CAGATATTTAGAGTTAATAAAGATGCTTCAGGGAGATCTACAAATAGCCATCAAAGCAGCACTGAGAAT
GAG
TTGAAGTACTCGGAACCACGACCCTGGAGCAGCACAGATTCAGACAGCTCTCTTCGAAACCTGAAAC
CT
GCTGTAACCAAAGCCAGCAGCTTCAGTGGAATCTCAGTCCTGACAAGAGGTGATAGTTCTGGAAGCAG
C
AAAAGCATAGGCAGGCTTTCAAAAACAGGTTCTGAGTCTTCTGGTAGTGTAGGGTCATCTACAGGCTCT
CTT
TCTCACATCCAGCAGCCTCTTCCAGGTACAGCTCTCAGCCAGTCTTCTCATGGCGCACCTGTCGTCT
AT
CCAACTGTCAGCACTCATAGTTCTCTTTCCTTTGATGGTGGCCTAAATGGGCAAGTCGCATCTCCTAG
C
ACTAGCTTCTTTTTGCTTCCCTTGGAAGCGGCAGGCATACCACCTGGCAGTATTCTGATCAACCCACAA
ACA
GGTCAGCCCTTCATAAACCCAGATGGGAGTCCAGTTGTGTATAATCCTCCTATGACTCAACAACCAG
TT
AGATCCCAAGTGCCTGGACCTCCACAGCCACCTCTGCCAGCCCCACCTCAACAACCAGCAGCTAATCA
C
ATTTTCTCACAGCCTGTTCATCCTCTGCAGTCCTCTTCACAGCCTGTTCAGTACTCTACAGCCCCTTAC
CCA
TCCCCGTTCCTGCCAGTCTCACCCACCCAGCAATACTCTGTGCAGGATAACCTAGGGTCTCAGTTTA
GC
CACATGAGTCTTGCTCGCCAGCCATCTGCTGATGGTTCTGACCCTCATGCCGCCATGTTCCAGTCCAC
T
GTGGTTCTTCAGTCTCCACAGCAGTCTGGTTATATCATGACAGCAGCCCCTCCACCACATCCTCCTCCA
CCG
CCACCACCACCACCTCCTCCTCCTCCCCTACCACCTGGGCAGCCAGTCCCTACTGCTGGATATCCTG
CC
TCTGGTCATCCTGTCAGCCAGCCTGTGCTCCAGCAGCAGGGATATATTCAGCAGCCATCACCACAGAT
G
CCAGCCTGTTATTGCGCTCCAGGCCACTATCACTCCAGCCAACCTCAGTATCGCCCAGTCCCTTCTGTT
CAT
TACAATTCACATCTAAACCAACCACTGCCACAACCTGCGCAGCAGACAGGTTATCAAGTTATACCCA
AC
CAGCAGCAAAACTACCAAGGAATAGTTGGAGTTCAGCAACCCCAGAGTCAGAGCCTAGTCAGTGGCCA
A
CCCAACAGCATTGGAAATCAGATTCAAGGAGTGGTCATCCCCTATACTTCAGTGCCAACATATCAGGTT
TCA
CTGCCTCAAGGTTCTCAAGGAATTCCCCATCAGACTTATCAACAGCCTGTTATGTTCCCTAATCAGT
CT
AATCAAGGATCTATGCCCACAACAGGAATGCCTGTTTACTATAGTGTCATTCCACCTGGTCAACAAAA
C
AATTTAAGCTCTTCAGTAGGTTACCTGCAACATCCAGGATCAGAACAAGTACAATTTCCTCGAACCACT
TCA
CCATGCAGTTCCCAGCAGCTTCAAGGCCACCAATGTACAGCTGGACCACCACCGCCACCTGGTGGGG
GG
ATGGTGATGATGCAGCTCAGTGTACCAAACAATCCACAATCTTGTGCCCACTCACCCCCGCAGTGGAA
A
CAAAACAAATATTACTGTGATCACCAGAGAGGACAGAAGTGTGTAGAATTTAGCAGTGTAGACAATATT
GTC
CAGCACAGCCCTCAACTCAGTAGCCCCATTATTTCACCAGCTCAGTCGCCAGCACCAGCTCAGCTGT
CC
ACCCTGAAAACTGTACGTCCCTCTGGACCACCACTTTCCATCATGCCCCAATTTTCTAGACCTTTTGT
C
CCCGGGCAAGGAGATTCCAGGTATCCATTACTTGGCCAGCCACTGCAGTACAATCCTCCTGCTGTTCTG
CAC
GGACACATTCCAAACCAACAGGGTCAGCCTGGCAGCAGGCATGGAAACCGAGGAAGGAGACAAGCTA
AA
AAAGCTGCATCCACAGACCTTGGAGCAGGAGAAACAGTTGTTGGGAAGGTCTTGGAAATTACTGAACT
A
CCAGATGGAATAACTCGCATGGAAGCTGAAAAGCTTTTTGGGGAACTCTTTAAAATTGGCGCCAAGATC
CGG
TGGCTCCGGGACCCCCAGTCCCAACCACGTCGTCACCCCCTCTGCTGTGGCAGTGGGGACAACACTG
CC
AACCCTGAACGCTCTAAACCCAGTGACTTGGCCTCCACCTACACCGTCTTAGCCACATTCCCCTCCAT
T
TCAGCTGCACAGAATGCACTGAAGAAACAAATTAACTCAGTTAACAAGTTTAAGCTGAGAACAAGCAAG
AAG
CACTATGACTTTCACATTTTGGAAAGGGCAAGTTCTCAGTAA


Translation (1134 aa):
MRMSDTVTVKDETATMKDLEAEVKDTTRVENLIKSENYGKILVEKNEHCIENNIDLQRPLQSFGQTGKRS
K
SSSKLKLVRSLAVCEESPPPPAPEISQENQEKIQIQLTQSFEKEEKPSKDEAEKEKASDKLPRKMLSRD
S
SQEYTDSTGIDLHEFLVNTLKNNP
RDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYF
G
LDHNVDQSGKSVIVNKTSNTR
IPDQKFNEHIKDDKGEDFQKRYILKRDNSSFDKDDNQMRIRLKDDRRS
K
SIEEREEEYQRARDRIFSQD
SLCSQENYIIDKRLQDEDASSTQQRRQIFRVNKDASGRSTNSHQSSTEN
E
LKYSEPRPWSSTDSDSSLRNLKPAVTKASSFSGISVLTRGDSSGSSKSIGRLSKT
GSESSGSVGSSTGS
L
SHIQQPLPGTALSQSSHGAPVVYPTVSTHSSLSFDGGLNGQVASPSTSFFLLPLEAAGIPPGSILINPQ
T
GQPFINPDGSPVVYNPPMTQQPVRSQVPGPPQPPLPAPPQQPAANHIFSQPVHPLQSSSQPVQYSTAPY
P
SPFLPVSPTQQYSV
QDNLGSQFSHMSLARQPSADGSDPHAAMFQSTVVLQSPQQSGYIMTAAPPPHPPP
P
PPPPPPPPPLPPGQPVPTAGYPASGHPVSQPVLQQQGYIQQPSPQ
MPACYCAPGHYHSSQPQYRPVPSV
H
YNSHLNQPLPQPAQQT
GYQVIPNQQQNYQGIVGVQQPQSQSLVSGQPNSIGNQIQGVVIPYTSVPTYQV
S
LPQGSQGIPHQTYQQPVMFPNQSNQGSMPTTGMPVYYSVIPPGQQNNL
SSSVGYLQHPGSEQVQFPRTT
S
PCSSQQLQGHQCT
AGPPPPPGGGMVMMQLSVPNNPQSCAHSPPQWKQNKYYCDHQRGQKCVEFSSVDNI
V
Q
HSPQLSSPIISPAQSPAPAQLSTLKTVRPSGPPLSIMPQFSRPFVPGQGDSRYPLLGQPLQYNPPAVL
H
GHIPNQQ
GQPGSRHGNRGRRQAKKAASTDLGAGETVVGKVLEITELPDGITRMEAEKLFGELFKIGAKI
R
WLRDPQSQPRRHPLCCGSGDNTANPERSKPSDLASTYTVLATFPSISAAQNALKKQINSVNKFKLRTSK
K
HYDFHILERASSQ




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser