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Report for CCDS10022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10022.1 Public Homo sapiens 15 APBA2 24 110 108 CCDS HistoryNCBI Gene:321Re-query CCDS DB by CCDS ID:10022.1Re-query CCDS DB by GeneID:321See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10022.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000561069.5 ENSP00000453144.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000561069.5Link to Ensembl Protein Viewer:ENSP00000453144.1Re-query CCDS DB by Nucleotide ID:ENST00000561069Re-query CCDS DB by Protein ID:ENSP00000453144
Original member Current member EBI ENST00000558402.5 ENSP00000453293.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000558402.5Link to Ensembl Protein Viewer:ENSP00000453293.1Re-query CCDS DB by Nucleotide ID:ENST00000558402Re-query CCDS DB by Protein ID:ENSP00000453293
Original member Current member EBI ENST00000558259.5 ENSP00000454171.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000558259.5Link to Ensembl Protein Viewer:ENSP00000454171.1Re-query CCDS DB by Nucleotide ID:ENST00000558259Re-query CCDS DB by Protein ID:ENSP00000454171
Original member Current member EBI ENST00000683413.1 ENSP00000507394.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683413.1Link to Ensembl Protein Viewer:ENSP00000507394.1Re-query CCDS DB by Nucleotide ID:ENST00000683413Re-query CCDS DB by Protein ID:ENSP00000507394
Original member Current member NCBI NM_001353788.2 NP_001340717.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001353788.2Link to Protein Sequence:NP_001340717.1Re-query CCDS DB by Nucleotide ID:NM_001353788Re-query CCDS DB by Protein ID:NP_001340717Link to BLAST:NP_001340717.1
Original member Current member NCBI NM_001353789.2 NP_001340718.1 Accepted alive Link to Nucleotide Sequence:NM_001353789.2Link to Protein Sequence:NP_001340718.1Re-query CCDS DB by Nucleotide ID:NM_001353789Re-query CCDS DB by Protein ID:NP_001340718Link to BLAST:NP_001340718.1
Original member Current member NCBI NM_001353790.2 NP_001340719.1 Accepted alive Link to Nucleotide Sequence:NM_001353790.2Link to Protein Sequence:NP_001340719.1Re-query CCDS DB by Nucleotide ID:NM_001353790Re-query CCDS DB by Protein ID:NP_001340719Link to BLAST:NP_001340719.1
Original member Current member NCBI NM_001353791.2 NP_001340720.1 Accepted alive Link to Nucleotide Sequence:NM_001353791.2Link to Protein Sequence:NP_001340720.1Re-query CCDS DB by Nucleotide ID:NM_001353791Re-query CCDS DB by Protein ID:NP_001340720Link to BLAST:NP_001340720.1
Original member Current member NCBI NM_001379685.1 NP_001366614.1 Accepted alive Link to Nucleotide Sequence:NM_001379685.1Link to Protein Sequence:NP_001366614.1Re-query CCDS DB by Nucleotide ID:NM_001379685Re-query CCDS DB by Protein ID:NP_001366614Link to BLAST:NP_001366614.1
Original member Current member NCBI NM_005503.3 NP_005494.2 Accepted alive Link to Nucleotide Sequence:NM_005503.3Link to Protein Sequence:NP_005494.2Re-query CCDS DB by Nucleotide ID:NM_005503Re-query CCDS DB by Protein ID:NP_005494Link to BLAST:NP_005494.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001340717.1 749 Q99767-1 749 100% 0 0
NP_001340718.1 749 Q99767-1 749 100% 0 0
NP_001340719.1 749 Q99767-1 749 100% 0 0
NP_001340720.1 749 Q99767-1 749 100% 0 0
NP_001366614.1 749 Q99767-1 749 100% 0 0
NP_005494.2 749 Q99767-1 749 100% 0 0

Chromosomal Locations for CCDS 10022.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 29053885 29054835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29074921 29075001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29076055 29076091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29093075 29093220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29094278 29094313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29098490 29098576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29101599 29101784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29105379 29105558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29106607 29106819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29108270 29108389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29113876 29114016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29117062 29117133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2250 nt):
ATGGCCCACCGGAAGCTTGAGAGCGTGGGGAGCGGCATGTTGGACCATAGGGTGAGACCAGGTCCTGTCC
CTCACAGCCAGGAGCCCGAGAGCGAGGACATGGAGCTGCCCTTGGAGGGCTATGTGCCCGAGGGCCTGGA
GCTGGCTGCCCTGCGGCCAGAGAGCCCCGCGCCAGAGGAACAGGAGTGCCACAACCACAGCCCCGATGGG
GACTCCAGCTCTGACTACGTGAACAACACCTCTGAGGAGGAGGACTATGACGAGGGCCTCCCTGAGGAGG
AGGAGGGCATCACCTACTACATCCGCTACTGCCCTGAGGACGACAGCTACCTAGAGGGCATGGACTGCAA
CGGGGAGGAGTACCTGGCCCACAGTGCACACCCTGTGGACACTGATGAGTGCCAGGAGGCGGTGGAGGAG
TGGACGGACTCGGCGGGCCCGCACCCCCACGGCCACGAGGCTGAAGGCAGCCAGGACTACCCAGACGGCC
AACTGCCCATTCCGGAGGATGAGCCCTCCGTCCTTGAGGCCCATGACCAGGAAGAAGATGGTCACTACTG
TGCCAGCAAAGAGGGCTACCAGGACTACTACCCCGAGGAGGCCAACGGGAACACCGGCGCCTCCCCCTAC
CGCCTGAGGCGTGGGGATGGGGACCTGGAGGACCAGGAGGAGGACATTGACCAGATCGTGGCAGAGATCA
AGATGAGTCTGAGCATGACCAGCATCACCAGCGCCAGTGAGGCCAGCCCCGAGCATGGGCCTGAGCCAGG
GCCTGAGGACTCTGTAGAGGCCTGCCCACCCATCAAGGCCAGCTGCAGCCCCAGCAGGCACGAGGCGAGG
CCCAAGTCGCTGAACCTCCTTCCCGAGGCCAAGCACCCCGGAGACCCCCAGAGAGGCTTCAAGCCCAAGA
CCAGGACCCCAGAAGAGAGGCTGAAGTGGCCCCACGAGCAGGTTTGCAATGGTCTGGAGCAGCCAAGGAA
GCAGCAGCGCTCTGATCTCAATGGACCTGTTGACAATAACAACATTCCAGAGACAAAGAAGGTGGCATCA
TTTCCAAGTTTTGTGGCTGTTCCAGGGCCCTGCGAACCAGAAGACCTCATCGACGGGATCATCTTTGCTG
CCAATTACCTGGGGTCCACCCAGCTGCTATCAGAACGGAACCCTTCCAAAAACATCAGAATGATGCAAGC
GCAGGAGGCCGTCAGCCGGGTCAAGAGGATGCAAAAGGCTGCTAAGATCAAGAAAAAAGCGAATTCTGAG
GGGGATGCCCAGACGCTGACGGAAGTGGACCTCTTCATTTCCACCCAGAGGATCAAGGTTTTAAATGCAG
ACACGCAGGAAACCATGATGGACCACGCCTTGCGTACCATCTCCTACATCGCCGACATTGGGAACATTGT
AGTGCTGATGGCCAGACGCCGCATGCCCCGGTCAGCCTCTCAGGACTGCATCGAGACCACGCCCGGGGCC
CAGGAAGGCAAGAAGCAGTATAAGATGATCTGCCATGTGTTCGAGTCGGAGGATGCCCAGCTCATCGCCC
AGTCTATCGGCCAGGCCTTCAGCGTGGCCTACCAGGAGTTCCTGCGAGCCAATGGCATCAACCCCGAAGA
CTTGAGCCAGAAGGAATACAGCGACATCATCAACACCCAGGAGATGTACAACGACGACCTCATCCACTTC
TCAAACTCGGAGAACTGCAAGGAGCTGCAGCTGGAGAAGCACAAGGGCGAGATCCTGGGCGTGGTGGTGG
TGGAGTCGGGCTGGGGCTCCATCCTGCCCACGGTGATCCTGGCCAACATGATGAATGGCGGCCCGGCTGC
CCGCTCGGGGAAGCTGAGCATCGGGGACCAGATCATGTCCATCAATGGCACCAGCCTGGTGGGGCTGCCC
CTCGCCACCTGCCAAGGCATCATCAAGGGCCTGAAGAACCAGACACAGGTGAAGCTCAACATTGTCAGCT
GTCCCCCGGTCACCACGGTCCTTATCAAGCGGCCAGACCTCAAGTACCAGCTGGGCTTCAGCGTGCAGAA
TGGAATTATCTGCAGCCTCATGAGAGGGGGCATTGCTGAGCGAGGGGGCGTCCGTGTGGGCCACCGCATC
ATCGAGATCAACGGGCAGAGCGTGGTGGCCACAGCCCACGAGAAGATAGTCCAAGCTCTGTCCAACTCGG
TCGGAGAGATCCACATGAAGACCATGCCCGCCGCCATGTTCAGGCTCCTCACGGGTCAGGAGACCCCGCT
GTACATCTAG

Translation (749 aa):
MAHRKLESVGSGMLDHRVRPGPVPHSQEPESEDMELPLEGYVPEGLELAALRPESPAPEEQECHNHSPDG
DSSSDYVNNTSEEEDYDEGLPEEEEGITYYIRYCPEDDSYLEGMDCNGEEYLAHSAHPVDTDECQEAVEE
WTDSAGPHPHGHEAEGSQDYPDGQLPIPEDEPSVLEAHDQEEDGHYCASKEGYQDYYPEEANGNTGASPY
RLRRGDGDLEDQEEDIDQIVAEIKMSLSMTSITSASEASPEHGPEPGPEDSVEACPPIKASCSPSRHEAR
PKSLNLLPEAKHPGDPQRGFKPKTRTPEERLKWPHEQVCNGLEQPRKQQRSDLNGPVDNNNIPETKKVAS
FPSFVAVPGPCEPEDLIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANSE
GDAQTLTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSASQDCIETTPGA
QEGKKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHF
SNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLP
LATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRI
IEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFRLLTGQETPLYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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