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Report for CCDS48215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48215.1 Public Mus musculus 1 Mcmdc2 23 108 98 CCDS HistoryNCBI Gene:240697Re-query CCDS DB by CCDS ID:48215.1Re-query CCDS DB by GeneID:240697See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48215.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171802.7 ENSMUSP00000128620.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171802.7Link to Ensembl Protein Viewer:ENSMUSP00000128620.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171802Re-query CCDS DB by Protein ID:ENSMUSP00000128620
Original member Current member NCBI NM_177722.3 NP_808390.2 Accepted alive Link to Nucleotide Sequence:NM_177722.3Link to Protein Sequence:NP_808390.2Re-query CCDS DB by Nucleotide ID:NM_177722Re-query CCDS DB by Protein ID:NP_808390Link to BLAST:NP_808390.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808390.2 681 E9Q956-1 681 100% 0 0

Chromosomal Locations for CCDS 48215.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 9911719 9911812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9911910 9912040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9912114 9912173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9915474 9915669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9916316 9916438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9916550 9916654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9919020 9919145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9920435 9920672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9924057 9924262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9930781 9930947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9932002 9932181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9933923 9934065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9936996 9937105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9940378 9940544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2046 nt):
ATGGAGACTCTTCAGATGAAAGAGGCAGCCCTTGTCTATCTTGACAGAAGTGGAGGCCTCCAAAAGTTTA
TAGACGACTGCAAGTCCTACAATGATTCAAAGCAGAGTTATGCTGTCTATCGGTTCAGTATTCTAATAGA
CCCCTGTGACGTTGTTGAATTAGATGCTGACCTTGGAAATCACATTTTACACCATCCCTTAAAAGCTGCT
CGAGTTTTTCAATCAGTCTGCTTTGTTGCTGTTAAGACTCTCTCATTAATTGGACAGTTACAGACTGAAA
CTCAAATCAATATTGTGCTGAAGTTAACACATTTACCAGCCCTGCCAAGCTATACTCTTGATCTTTGTGA
GTTTCCACTTAATTATGCATCTCAGAGATTTTATATGATGCAAGGAATTGTGATTGCAATGACAACTATA
ACCAAGTACACTCAAGGTGCAAGGTTCTTGTGTTCAGATGGAGTGTGTCCTCTTTCAAAAGGATTTCAGT
ATGTGAGAGTCCATGTGCCTGGAGCTACAGAATCTGCAACAGTAAGAAATGACTTTTTATGCAGTCTCTG
TTCATCTTCACTTCAAGAAGACAGAAAATTTAGAGTACTTGGTGATAAACAGATAGTTGAAATAATCACC
ACAAAAATGTTTCATGCTTTTCAAGGAGACTCTAAAAACCAGCCATTTAGGTTTCAATCACTTGGTATTT
TCCTAAGAGATGAACTAGTGAATAAGATGAAAATAGGAAATGAATATAAAATTATTGGAATTCCAGTCTG
TGTCAAAACTTCACAAACTGCTCTCTGTGTAGAAGCAAATAATATCACTCCCCACACAGCAAAAGTTCCT
TTAGGAATTAGTGACAACTTTAGGCGTCTCCTCTCCTTGACTTCGAGCTCGTGCTGGAAATTCACAGCAA
TGCTGGCCAATGTCTTTGCATCACAGATTGTTGCTCCTGGGACTTACAATTTGCTCAAACTTTGTTTGTT
GATGAGTCTAGTACAGACAAGAGACTGCAACAGGGAACGAGAAGACTGCTTGGATATTTTAGTTATAACC
AGTGACACTCTGCTTGTAGACAGACTTTTGAATTTTAGCATGAATCTTGTCTCCCGTGGTATACGTCATC
CTGTCTGTACAGAAGTTTTTCCTACAGTGTCCAGAAATAAATATGGAACAGGAGCAGTGAGCATTCAGGC
CGGCAGTGCTTTGCTTGCTAAGGGTGGTATCTGCTTTATAGGAGACCTGACATCCCATAAAAAAGATAAA
CTTGAACAGCTTCAATCAGCTTTGGAGAGCAGAAGCGTTACAGTATTCATCCCAGGAAAGAAGTTTGGGG
ATGATTTCGATCAGCAAATGACTTTTCCCATTCAGTGCAGTTTTTGGTCTTTTGTTGATATGGATTCATC
TTCAAGGAGAAATGTGCAGAAAACCAGTACTCTGATTGGTCAGATGGATTGCAGTTTGATTCCAGCCAAC
CTTGCAGAGGCATTTGGATTACTGATTAACTGCAGTGAGGCATCTCCTTGCCACCCACTTCTTCCTACTG
TGCAGCACACTTTAAAGAAAGCAGTGGAGCCTGAGGGGCTGCTGTACTTAGCGTCTAAGCAGTTCACAAC
TGAAGACTTTGAAAAGCTACTGGCTTTTGCAAAGAGTTTGAATATGGAATTCAGCTTGGAAGCAGAAAGA
ATGATTCATGGCTATTATCTAGCAAGTCGCAGAATAAGAACAGATTCTATACATGGATCAAAGCTGTCAG
CATCTGCATTAAAATATTTAGTGTCTTTATCTGAAGCCCACGCCCGGCTGAGCCTAAGGACCACAGTGCT
CAGAGAAGACGCACTCATCGCAGCCTTGTTGTTGGAAATCTCTCTCACACTGAGATACGGGGCCACTCCA
TTTTGTGTTGCTCCCAATGCATTATTTCCATTTGAGCTGTATAATGAAGAATATTTAGAGCAAAGAGATC
TCTACCTGACTCAGTGCCAACAGCAGCTCCAACAGTTTATTGCCACATGTGGACCTGGGACAACTGTCTT
TTCTAGTGATGAATAA

Translation (681 aa):
METLQMKEAALVYLDRSGGLQKFIDDCKSYNDSKQSYAVYRFSILIDPCDVVELDADLGNHILHHPLKAA
RVFQSVCFVAVKTLSLIGQLQTETQINIVLKLTHLPALPSYTLDLCEFPLNYASQRFYMMQGIVIAMTTI
TKYTQGARFLCSDGVCPLSKGFQYVRVHVPGATESATVRNDFLCSLCSSSLQEDRKFRVLGDKQIVEIIT
TKMFHAFQGDSKNQPFRFQSLGIFLRDELVNKMKIGNEYKIIGIPVCVKTSQTALCVEANNITPHTAKVP
LGISDNFRRLLSLTSSSCWKFTAMLANVFASQIVAPGTYNLLKLCLLMSLVQTRDCNREREDCLDILVIT
SDTLLVDRLLNFSMNLVSRGIRHPVCTEVFPTVSRNKYGTGAVSIQAGSALLAKGGICFIGDLTSHKKDK
LEQLQSALESRSVTVFIPGKKFGDDFDQQMTFPIQCSFWSFVDMDSSSRRNVQKTSTLIGQMDCSLIPAN
LAEAFGLLINCSEASPCHPLLPTVQHTLKKAVEPEGLLYLASKQFTTEDFEKLLAFAKSLNMEFSLEAER
MIHGYYLASRRIRTDSIHGSKLSASALKYLVSLSEAHARLSLRTTVLREDALIAALLLEISLTLRYGATP
FCVAPNALFPFELYNEEYLEQRDLYLTQCQQQLQQFIATCGPGTTVFSSDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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