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Report for CCDS86437.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86437.2 Public Homo sapiens 15 GOLGA8F 24 110 108 CCDS HistoryNCBI Gene:100132565Re-query CCDS DB by CCDS ID:86437.2Re-query CCDS DB by GeneID:100132565See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 86437.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000526619.7 ENSP00000456138.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000526619.7Link to Ensembl Protein Viewer:ENSP00000456138.3Re-query CCDS DB by Nucleotide ID:ENST00000526619Re-query CCDS DB by Protein ID:ENSP00000456138
Original member Current member NCBI NM_001350920.2 NP_001337849.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001350920.2Link to Protein Sequence:NP_001337849.2Re-query CCDS DB by Nucleotide ID:NM_001350920Re-query CCDS DB by Protein ID:NP_001337849Link to BLAST:NP_001337849.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001337849.2 636 P0DX52 636 100% 0 0

Chromosomal Locations for CCDS 86437.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 28378762 28378809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 28380507 28380626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 28381212 28381271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 28381455 28381535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 28382390 28382428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 28382702 28382749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 28382838 28382922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 28383018 28383127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 28384147 28384236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 28384343 28384450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 28384646 28384733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 28385125 28385381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 28385649 28385717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 28387089 28387164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 28387602 28387693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 28388268 28388368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 28388451 28388551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 28388641 28388793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 28388879 28389063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1911 nt):
ATGGCAGAAGAAACTCGACAAAGTAAATTGGCAGCAGCCAAGAGAAAGTTAAAAGAATATTGGCAGAGAA
ACAGCCCTGGTGTTCCAGCAGGAGCCAAGAGGAACAGGAAAACAAATGGCAGCATCCATGAGACAGCCAC
TTCTGGTGGTTGCCACTCACCTGGAGATTCAGCAACAGGTATCCACGGGGAGAGCCCTACATCATCTGCT
ACCCTGAAGGATCTGGAGAGCCCGTGCCAAGAACTAGCAGTAGTCCCAGACTCGAGGTCCGTAAAAGTCA
GTCAACTGAAGAACACCATCAAATCTTTGAAACAACAGAATAAACAAGTGGAACATCAGCTGGAAGAAGA
AAAGAAAGCAAACAACGAGAAACAGAAAGCCGAAAGGGAGCTAGAGGTTCAAATCCAGAGATTGAACATA
CAGAAAGGGAAACTAAATACGGACCTGTACCACACGAAACGTTCTCTCAGATACTTTGAAGAAGAGTCCA
AGGATCTGGCCGTCCGTCTGCAACATTCATTGCAGCGTAAAGGAGAGTTAGAGCGGGCTCTCTCTGCTGT
CACCGCCACACAGAAGAAGAAGGCGGAGAGGCAGTTCTCCAGCCGCAGTAAAGCACGTATGGAGTGGAAG
TTAGAGCAGTCCATGCGGGAGCAGGCACTGCTGAAAGCGCAGCTGACACAGTTGAAGGAGTCACTTAAAG
AAGTCCAGCTAGAGAGGGATGAATATGCTGAACATCTAAAAGGAGAGAGGGCCCGGTGGCAGCAGAGGAT
GAGAAAAATGTCGCAGGAGGTTTGCTCGTTGAAGAAGGAGAAGAAGCATGATAAATATCGGGTAGAGAAG
CTGGAGAGGAGCTTGTCCAAACTCAAACACCAGATGGCTGAACCTCTGCCCCCGGAGCCCCCAGCAGTGC
CCTCTGAGGTGGAGCTGCAGCACCTGAGGAAGGAACTAGAGAGAGTGGCAGGAGAGCTCCAGGCCCAGGT
GGAGTACAATCAGCGCATAAGTCTCCTGAATGAGGGGCAAAAGGAGAGGCTTCGGGAGCAGGAGGAGAGG
CTTCAGGAGCAGCAGGAGAGGCTTCCAGAGCAGGAGGAGAGGCTTCAGCAGCTGGCCGAGCCACAGAACA
GCTTCAAGGAGCTGAACAATGAGAACAAGAGCGTACTACAGTTGGAGCAGCAAGTAAAGGAGCTGCAGGA
GAAGCTAGGCAAGGAGCGTCTGGAAGCTGCGAGCCAGCAGAAACAGCAGCTAACGGCCCAGTTGAGCCTC
ATGGCTCTCCCTGGGGAAGGAGATGGAGGAGGACATCTGGACAGTGAGGGGGAGGAGGCACCTCGGCCCA
TTCCTAGCATCCCACAGGACCTGGAGAGCAGGGAGGCCATGAGCGGCTTTATGGACCACCTGGAGGAGAA
GGCAGACCTGAGTGAGCTGGTGGAGAAAGAAGAACTTGGATTCTTCCAGTACTACAGAGAGAGATGCCAT
CAGAAAGTTTATCACCCTATAACAAAGCCAGGGGGCAGTGCCAAAGATGCAGCACCGGGAGGAGGACACC
ATCAGGCTGGCCCTGGACAGGGAGGAGATGAAGGTGAAGCTGCTGGAGCTGCAGGAGATGGTGTTGCAGC
TGGTGGCGACTACAAGGGACACAGCAAATTCTTGGTGACTGCCCAGAACCCTGCTCATGAGCCCAGTCCA
GGAGCCCCAGCCCCCCAGGAGCTTGGGGCTGCCCACAAGCATGGTGATCTTTGTGAGGTGAGCCTCACTG
ACAGCGTGGAGCCTGTGCAAGGAGAGGCCAGGGAGGGTTCTCCCCACGACAACCCTACTGCACAGCCGAT
CGTGCAGGACCACCAGGAGCACCCAGGCTTGGGCAGCAACTGCTGTGTGCCATTCTTTTGCTGGGCTTGG
CTGCCAAGAAGAAGGAGATAA

Translation (636 aa):
MAEETRQSKLAAAKRKLKEYWQRNSPGVPAGAKRNRKTNGSIHETATSGGCHSPGDSATGIHGESPTSSA
TLKDLESPCQELAVVPDSRSVKVSQLKNTIKSLKQQNKQVEHQLEEEKKANNEKQKAERELEVQIQRLNI
QKGKLNTDLYHTKRSLRYFEEESKDLAVRLQHSLQRKGELERALSAVTATQKKKAERQFSSRSKARMEWK
LEQSMREQALLKAQLTQLKESLKEVQLERDEYAEHLKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEK
LERSLSKLKHQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQAQVEYNQRISLLNEGQKERLREQEER
LQEQQERLPEQEERLQQLAEPQNSFKELNNENKSVLQLEQQVKELQEKLGKERLEAASQQKQQLTAQLSL
MALPGEGDGGGHLDSEGEEAPRPIPSIPQDLESREAMSGFMDHLEEKADLSELVEKEELGFFQYYRERCH
QKVYHPITKPGGSAKDAAPGGGHHQAGPGQGGDEGEAAGAAGDGVAAGGDYKGHSKFLVTAQNPAHEPSP
GAPAPQELGAAHKHGDLCEVSLTDSVEPVQGEAREGSPHDNPTAQPIVQDHQEHPGLGSNCCVPFFCWAW
LPRRRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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