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Report for CCDS4752.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4752.1 Public Homo sapiens 6 HLA-DQA1 24 110 108 CCDS HistoryNCBI Gene:3117Re-query CCDS DB by CCDS ID:4752.1Re-query CCDS DB by GeneID:3117See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4752.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343139.11 ENSP00000339398.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000343139.11Link to Ensembl Protein Viewer:ENSP00000339398.5Re-query CCDS DB by Nucleotide ID:ENST00000343139Re-query CCDS DB by Protein ID:ENSP00000339398
Original member Current member EBI ENST00000374949.2 ENSP00000364087.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374949.2Link to Ensembl Protein Viewer:ENSP00000364087.2Re-query CCDS DB by Nucleotide ID:ENST00000374949Re-query CCDS DB by Protein ID:ENSP00000364087
Original member Current member EBI ENST00000395363.5 ENSP00000378767.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395363.5Link to Ensembl Protein Viewer:ENSP00000378767.1Re-query CCDS DB by Nucleotide ID:ENST00000395363Re-query CCDS DB by Protein ID:ENSP00000378767
Original member Current member NCBI NM_002122.5 NP_002113.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002122.5Link to Protein Sequence:NP_002113.2Re-query CCDS DB by Nucleotide ID:NM_002122Re-query CCDS DB by Protein ID:NP_002113Link to BLAST:NP_002113.2

Chromosomal Locations for CCDS 4752.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 32637459 32637540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32641310 32641558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32641972 32642253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32642610 32642764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGATCCTAAACAAAGCTCTGCTGCTGGGGGCCCTCGCTCTGACCACCGTGATGAGCCCCTGTGGAGGTG
AAGACATTGTGGCTGACCACGTTGCCTCTTGTGGTGTAAACTTGTACCAGTTTTACGGTCCCTCTGGCCA
GTACACCCATGAATTTGATGGAGATGAGCAGTTCTACGTGGACCTGGAGAGGAAGGAGACTGCCTGGCGG
TGGCCTGAGTTCAGCAAATTTGGAGGTTTTGACCCGCAGGGTGCACTGAGAAACATGGCTGTGGCAAAAC
ACAACTTGAACATCATGATTAAACGCTACAACTCTACCGCTGCTACCAATGAGGTTCCTGAGGTCACAGT
GTTTTCCAAGTCTCCCGTGACACTGGGTCAGCCCAACACCCTCATTTGTCTTGTGGACAACATCTTTCCT
CCTGTGGTCAACATCACATGGCTGAGCAATGGGCAGTCAGTCACAGAAGGTGTTTCTGAGACCAGCTTCC
TCTCCAAGAGTGATCATTCCTTCTTCAAGATCAGTTACCTCACCTTCCTCCCTTCTGCTGATGAGATTTA
TGACTGCAAGGTGGAGCACTGGGGCCTGGACCAGCCTCTTCTGAAACACTGGGAGCCTGAGATTCCAGCC
CCTATGTCAGAGCTCACAGAGACTGTGGTCTGTGCCCTGGGGTTGTCTGTGGGCCTCATGGGCATTGTGG
TGGGCACTGTCTTCATCATCCAAGGCCTGCGTTCAGTTGGTGCTTCCAGACACCAAGGGCCATTGTGA

Translation (255 aa):
MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYVDLERKETAWR
WPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFP
PVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPA
PMSELTETVVCALGLSVGLMGIVVGTVFIIQGLRSVGASRHQGPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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