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Report for CCDS49059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49059.1 Public Mus musculus 12 Prkd1 23 108 98 CCDS HistoryNCBI Gene:18760Re-query CCDS DB by CCDS ID:49059.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49059.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002765.8 ENSMUSP00000002765.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002765.8Link to Ensembl Protein Viewer:ENSMUSP00000002765.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000002765Re-query CCDS DB by Protein ID:ENSMUSP00000002765
Original member NCBI NM_008858.3 NP_032884.2 Updated not alive Link to Nucleotide Sequence:NM_008858.3Link to Protein Sequence:NP_032884.2Re-query CCDS DB by Nucleotide ID:NM_008858Re-query CCDS DB by Protein ID:NP_032884
Current member NCBI NM_008858.4 NP_032884.2 Accepted alive Link to Nucleotide Sequence:NM_008858.4Link to Protein Sequence:NP_032884.2Re-query CCDS DB by Nucleotide ID:NM_008858Re-query CCDS DB by Protein ID:NP_032884Link to BLAST:NP_032884.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032884.2 918 Q62101 918 100% 0 0

Chromosomal Locations for CCDS 49059.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 50342002 50342220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50343054 50343139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50364512 50364779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50365614 50365712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50366302 50366463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50383400 50383506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50385143 50385215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50387216 50387268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50388253 50388532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50389910 50389987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50391326 50391449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50392835 50393039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50394599 50394676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50394830 50395040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50419853 50419876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50425439 50425599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50428103 50428234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50489903 50490041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50648716 50648973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2757 nt):
ATGAGCGTCCCTCCGCTGCTGCGACCGCCTAGCCCGCTCCTGCCCGCCGCGGCCGCCGTGGCTGCTGCCG
CCGCTGCGCTGGTCCCAGGCTCCGGGCCCGCGCCCTTCCCGGCGCCTGGGGCCGCCCCGGCGGGGGGCAT
CTCGTTCCATCTGCAGATCGGCCTGAGCCGCGAGCCGGTGCTGCTCCTGCAGGACTCCTCTGGCGACTAC
AGCCTGGCGCATGTCCGGGAGATGGCTTGTTCCATCGTGGACCAGAAGTTCCCCGAATGTGGTTTCTATG
GACTCTATGATAAGATCCTGCTTTTTCGGCACGATCCTGCCTCCGACAACATCCTTCAGCTGGTGAAAAT
CGCAAGTGATATCCAGGAGGGTGATCTCATTGAAGTGGTCCTGTCAGCTTCAGCCACCTTCGAAGACTTC
CAGATCCGGCCCCATGCTCTCTTCGTTCATTCATACAGAGCCCCAGCTTTCTGTGATCACTGTGGAGAAA
TGCTGTGGGGGCTGGTGCGTCAAGGCCTTAAATGTGAAGGATGTGGTCTGAATTACCATAAGAGATGTGC
ATTTAAAATCCCCAACAATTGCAGTGGAGTTAGAAGGAGAAGACTCTCCAATGTGTCCCTCACTGGACTC
GGTACTGTCCGCACAGCATCGGCTGAGTTCTCCACCAGTGTCCCTGATGAGCCTTTACTGTCTCCTGTGA
GCCCTGGCTTTGAGCAAAAGTCTCCATCTGAGTCATTTATCGGCCGTGAGAAGAGGTCAAATTCGCAGTC
ATACATCGGACGGCCGATTCAGCTCGACAAGCTCCTGATGTCTAAGGTGAAGGTGCCACACACCTTTGTC
ATCCACTCCTACACACGGCCCACGGTCTGCCAGTTCTGTAAGAAGCTCCTCAAGGGCCTCTTCCGGCAGG
GCTTGCAGTGCAAAGATTGCAGATTCAACTGTCACAAACGCTGCGCACCAAAAGTACCAAACAACTGCTT
GGGTGAAGTGACCATCAATGGAGAATTACTTAGCCCTGGTGCAGAATCTGATGTTGTTATGGAAGAAGGG
AGTGATGACAATGACAGTGAGCGGAACAGTGGGCTCATGGATGACATGGACGAGGCCATGGTCCAAGATA
CTGAGATGGCTTTGGCAGAGGGCCAGAGTGGAGGTGCAGAGATGCAAGATCCAGATGCAGACCAGGAGGA
CTCCAACAGAACCATCAGCCCTTCAACGAGCAACAACATCCCGCTCATGAGGGTAGTGCAGTCTGTGAAG
CACACGAAGCGGAGGAGCAGCACTGTGATGAAGGAAGGGTGGATGGTCCACTACACCAGCAAGGACACAC
TGCGGAAAAGGCACTACTGGAGATTGGACAGCAAATGCATAACACTCTTCCAAAATGACACAGGGAGCCG
GTACTACAAGGAAATTCCTTTATCAGAAATATTATGTCTGGAACCAGCAAAACCTTCAGCTTTAACTCCC
GTTGGAGCGACTCCTCATTGTTTTGAAATCACTACAGCGAATGTAGTGTATTATGTGGGAGAAAACGTGG
TTAACCCATCAAGTTCCCCACCAAACAACAGTGTTCTCCCCAGTGGCATCGGTCCGGATGTGGCCAGGAT
GTGGGAGGTGGCCATCCAGCATGCTCTTATGCCCGTCATCCCCAAGGGCTCCTCTGTTGGCTCCGGATCC
AACTCACACAAAGATATTTCTGTGAGCATTTCCGTTTCAAATTGCCAGATTCAGGAAAATGTGGATATCA
GCACAGTCTATCAAATATTTCCTGATGAAGTTCTGGGTTCCGGACAGTTTGGAATTGTTTATGGAGGTAA
ACATCGTAAAACAGGAAGAGATGTAGCTATTAAGATTATTGACAAATTAAGATTTCCTACAAAACAAGAA
AGTCAGCTTCGTAATGAGGTTGCAATTTTACAGAACCTTCATCACCCTGGTGTTGTAAATTTGGAGTGTA
TGTTTGAGACGCCTGAAAGAGTGTTTGTTGTTATGGAAAAACTCCATGGAGACATGCTGGAGATGATCTT
GTCAAGTGAAAAGGGCAGGTTGCCAGAACACATAACGAAGTTTTTAATTACTCAGATACTAGTGGCTTTG
CGACATCTTCATTTTAAAAACATCGTTCACTGTGACCTCAAGCCAGAAAATGTGTTGCTGGCATCAGCCG
ACCCTTTCCCTCAGGTGAAGCTCTGTGATTTTGGTTTTGCCCGGATCATTGGAGAGAAGTCTTTTAGGAG
GTCAGTGGTGGGTACCCCAGCATACCTGGCACCTGAAGTTCTGAGGAACAAGGGCTATAACCGCTCTCTG
GACATGTGGTCTGTTGGGGTCATCATCTATGTGAGCCTGAGTGGTACCTTCCCTTTTAATGAAGATGAAG
ATATCCATGATCAGATCCAGAATGCAGCCTTCATGTATCCACCCAACCCGTGGAAGGAGATTTCTCATGA
AGCCATTGATCTTATCAATAACTTGCTACAAGTGAAAATGAGAAAACGCTACAGTGTGGATAAAACCTTG
AGTCACCCTTGGCTACAGGACTATCAGACCTGGTTAGATTTACGAGAGCTGGAATGCAGAATTGGAGAAC
GCTATATTACCCACGAAAGCGATGACTCCAGGTGGGAACAGTACGCAGGCGAGCAGGGGCTGCAGTACCC
GGCGCACCTGATCAGTCTGAGTGCTAGCCACAGCGACAGTCCTGAGGCTGAAGAGAGAGAGATGAAAGCC
CTCAGTGAGCGTGTCAGCATCCTCTGA

Translation (918 aa):
MSVPPLLRPPSPLLPAAAAVAAAAAALVPGSGPAPFPAPGAAPAGGISFHLQIGLSREPVLLLQDSSGDY
SLAHVREMACSIVDQKFPECGFYGLYDKILLFRHDPASDNILQLVKIASDIQEGDLIEVVLSASATFEDF
QIRPHALFVHSYRAPAFCDHCGEMLWGLVRQGLKCEGCGLNYHKRCAFKIPNNCSGVRRRRLSNVSLTGL
GTVRTASAEFSTSVPDEPLLSPVSPGFEQKSPSESFIGREKRSNSQSYIGRPIQLDKLLMSKVKVPHTFV
IHSYTRPTVCQFCKKLLKGLFRQGLQCKDCRFNCHKRCAPKVPNNCLGEVTINGELLSPGAESDVVMEEG
SDDNDSERNSGLMDDMDEAMVQDTEMALAEGQSGGAEMQDPDADQEDSNRTISPSTSNNIPLMRVVQSVK
HTKRRSSTVMKEGWMVHYTSKDTLRKRHYWRLDSKCITLFQNDTGSRYYKEIPLSEILCLEPAKPSALTP
VGATPHCFEITTANVVYYVGENVVNPSSSPPNNSVLPSGIGPDVARMWEVAIQHALMPVIPKGSSVGSGS
NSHKDISVSISVSNCQIQENVDISTVYQIFPDEVLGSGQFGIVYGGKHRKTGRDVAIKIIDKLRFPTKQE
SQLRNEVAILQNLHHPGVVNLECMFETPERVFVVMEKLHGDMLEMILSSEKGRLPEHITKFLITQILVAL
RHLHFKNIVHCDLKPENVLLASADPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRNKGYNRSL
DMWSVGVIIYVSLSGTFPFNEDEDIHDQIQNAAFMYPPNPWKEISHEAIDLINNLLQVKMRKRYSVDKTL
SHPWLQDYQTWLDLRELECRIGERYITHESDDSRWEQYAGEQGLQYPAHLISLSASHSDSPEAEEREMKA
LSERVSIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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