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Report for CCDS18359.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18359.1 Public Mus musculus 4 Plaa 23 108 98 CCDS HistoryNCBI Gene:18786Re-query CCDS DB by CCDS ID:18359.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18359.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107107.8 ENSMUSP00000102724.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107107.8Link to Ensembl Protein Viewer:ENSMUSP00000102724.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107107Re-query CCDS DB by Protein ID:ENSMUSP00000102724
Original member NCBI NM_172695.2 NP_766283.2 Updated not alive Link to Nucleotide Sequence:NM_172695.2Link to Protein Sequence:NP_766283.2Re-query CCDS DB by Nucleotide ID:NM_172695Re-query CCDS DB by Protein ID:NP_766283
Current member NCBI NM_172695.3 NP_766283.2 Accepted alive Link to Nucleotide Sequence:NM_172695.3Link to Protein Sequence:NP_766283.2Re-query CCDS DB by Nucleotide ID:NM_172695Re-query CCDS DB by Protein ID:NP_766283Link to BLAST:NP_766283.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766283.2 794 P27612 794 100% 0 0

Chromosomal Locations for CCDS 18359.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 94569347 94569909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94571687 94571851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94573982 94574083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94575166 94575234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94578387 94578455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94582481 94582700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94583414 94583571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94583833 94584002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94586295 94586430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94586753 94586920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94587281 94587401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94587487 94587587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94589881 94590074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94602877 94603025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2385 nt):
ATGGCGAGCGGCGCCTCCAGATACCGGCTGAGCTGCTCGCTCCCGGGCCACGAACTGGACGTGAGGGGCC
TGGTGTGCTGCCTCTACCCGCCGGGAGCCTTTGTGTCTGTGTCCCGGGATCGGACCACCCGCCTCTGGGC
TCCAGACAGTCCTAACAGGGGCTTTACAGAAATGCACTGTATGAGCGGCCACTCTAATTTTGTGTCTTGT
GTGTGTATCATACCCTCAAGTGACATATATCCTCATGGACTGATTGCCACTGGAGGAAATGACCACAATA
TTTGCATTTTCTCGCTGGACAGTCCAATGCCACTTTATATTTTAAAGGGTCACAAAGATACTGTTTGTAG
TCTTTCTTCTGGAAAATTTGGGACATTACTTAGTGGCTCATGGGACACCACTGCTAAAGTCTGGCTGAAT
GACAAATGCATGATGACATTACAGGGTCATACAGCCGCAGTATGGGCAGTAAAGATTTTACCTGAACAGG
GCTTAATGCTAACTGGATCAGCAGACAAGACCATTAAACTATGGAAGGCTGGAAGATGTGAGAGGACTTT
TTTAGGGCATGAAGACTGTGTAAGAGGCTTGGCAATCTTGAGTGAGACAGAATTTCTTTCCTGTGCAAAC
GATGCTAGTATTAGAAGGTGGCAGATCACTGGCGAGTGTCTGGAAGTATACTTTGGACATACAAATTATA
TTTATAGCATATCTGTCTTTCCAAACTCCAAAGATTTTGTGACCACTGCAGAAGACAGATCTCTAAGAAT
ATGGAAACATGGTGAATGCGCCCAAACAATCCGACTTCCAGCTCAGTCTATATGGTGTTGCTGCGTACTG
GAAAATGGTGACATTGTGGTTGGTGCGAGTGATGGTATTATTAGGGTGTTTACAGAGTCAGAGGAGCGGA
CAGCAAGTGCTGAGGAAATCAAAGCTTTTGAGAGAGAGCTCTCTCAGGCAACTATCGATTCCAAAACTGG
TGACTTGGGGGATATTAATGCGGAGCAGCTTCCTGGGAGGGAACATCTCAGTGAGCCAGGTACTAGAGAA
GGACAGACTCGTCTAATCAGAGATGGAGAGAGAGTTGAAGCCTATCAGTGGAGTGTTAGTGACGGGAGGT
GGATAAAAATTGGTGATGTTGTTGGCTCATCTGGTGCTAATCAGCAAACATCTGGAAAAGTTTTATATGA
AGGGAAAGAATTTGATTATGTTTTCTCAATCGATGTGAATGAAGGTGGACCATCGTATAAATTACCATAT
AATGTCAGTGACGATCCCTGGCTAGTTGCATACAACTTCTTGCAGAAAAATGATTTGAATCCCATGTTTC
TGGATCAGGTGGCTAAATTTATTATTGATAACACAAAAGGTCAAACACTGGGACTTGGGAATACCAGTTT
TTCAGATCCGTTTACAGGTGGTGGTCGCTATGTTCCAGGAACTTCAGGACCTTCCAACACAGTGCAGACA
GCAGATCCTTTCACAGGTGCTGGGCGTTACATGCCAGGTTCTGCAGGTATGGACACCACCATGACTGGAG
TTGATCCATTTACAGGGAACAGTGCCTACCGATCAGCTGCATCTAAAACAGTGAACATTTATTTCCCCAA
AAAAGAAGCTCTTACCTTTGACCAAGCAAACCCTACACAAATATTAGGAAAACTGAAGGAACTTAATGGA
ACTGCACCTGAAGAGAAGAAGCTAACTGAAGACGACTTAGTACTTCTTGAAAAGATACTGTCCCTGATTT
GTAATAATTCCTCAGAAAAGCCAACGGCCCAGCAACTTCAGATTTTGTGGAAAGCTATCAACTGGCCTGA
AGACATTGTCTTTCCTGCACTTGACATTCTTCGCCTATCGATTAAGCATCCCAATGTGAATGAGAATTTC
TGCAATGAAAAAGGAGACCAGTTCAGCAGCCATCTTATCAACCTTCTGAACCCCAAAGGAAAGCCAGCAA
ACCAGCTGCTTGCTCTTAGGACTTTTTGCAATTGCTTTGTTAGTCAGGCAGGACAAAAGCTCATGATGTC
CCAGAGGGAGTCACTGATGTCACATGCAATAGAACTGAAATCCGGGAGTAATAAGAACATTCATATTGCT
CTGGCTACATTGACCTTGAACTATTCTGTTTGTTTCCATAAAGACCATAACATTGAAGGGAAAGCTCAAT
GCCTCTCAGTAATTAGCACAATCTTGGAAGTTGTGCAAGACCTAGAAGCCACGTTTAGACTCCTTGTGGC
TCTTGGGACACTTATCAGTGATGATTCAAATGCTATACAATTAGCCAAATCTTTAGGTGTTGATTCTCAA
ATAAAAAAGTATGTCTCCGTATCAGAGCCAGCTAAAGTGAGTGAATGCTGTAGACTTGTCTTACATTTGC
TGTAG

Translation (794 aa):
MASGASRYRLSCSLPGHELDVRGLVCCLYPPGAFVSVSRDRTTRLWAPDSPNRGFTEMHCMSGHSNFVSC
VCIIPSSDIYPHGLIATGGNDHNICIFSLDSPMPLYILKGHKDTVCSLSSGKFGTLLSGSWDTTAKVWLN
DKCMMTLQGHTAAVWAVKILPEQGLMLTGSADKTIKLWKAGRCERTFLGHEDCVRGLAILSETEFLSCAN
DASIRRWQITGECLEVYFGHTNYIYSISVFPNSKDFVTTAEDRSLRIWKHGECAQTIRLPAQSIWCCCVL
ENGDIVVGASDGIIRVFTESEERTASAEEIKAFERELSQATIDSKTGDLGDINAEQLPGREHLSEPGTRE
GQTRLIRDGERVEAYQWSVSDGRWIKIGDVVGSSGANQQTSGKVLYEGKEFDYVFSIDVNEGGPSYKLPY
NVSDDPWLVAYNFLQKNDLNPMFLDQVAKFIIDNTKGQTLGLGNTSFSDPFTGGGRYVPGTSGPSNTVQT
ADPFTGAGRYMPGSAGMDTTMTGVDPFTGNSAYRSAASKTVNIYFPKKEALTFDQANPTQILGKLKELNG
TAPEEKKLTEDDLVLLEKILSLICNNSSEKPTAQQLQILWKAINWPEDIVFPALDILRLSIKHPNVNENF
CNEKGDQFSSHLINLLNPKGKPANQLLALRTFCNCFVSQAGQKLMMSQRESLMSHAIELKSGSNKNIHIA
LATLTLNYSVCFHKDHNIEGKAQCLSVISTILEVVQDLEATFRLLVALGTLISDDSNAIQLAKSLGVDSQ
IKKYVSVSEPAKVSECCRLVLHLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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