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Report for CCDS46998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46998.1 Public Homo sapiens 4 TMEM129 24 110 108 CCDS HistoryNCBI Gene:92305Re-query CCDS DB by CCDS ID:46998.1Re-query CCDS DB by GeneID:92305See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46998.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382936.8 ENSP00000372394.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382936.8Link to Ensembl Protein Viewer:ENSP00000372394.3Re-query CCDS DB by Nucleotide ID:ENST00000382936Re-query CCDS DB by Protein ID:ENSP00000372394
Original member Current member EBI ENST00000536901.1 ENSP00000441812.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536901.1Link to Ensembl Protein Viewer:ENSP00000441812.1Re-query CCDS DB by Nucleotide ID:ENST00000536901Re-query CCDS DB by Protein ID:ENSP00000441812
Original member Current member NCBI NM_001127266.2 NP_001120738.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001127266.2Link to Protein Sequence:NP_001120738.1Re-query CCDS DB by Nucleotide ID:NM_001127266Re-query CCDS DB by Protein ID:NP_001120738Link to BLAST:NP_001120738.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120738.1 362 A0AVI4-1 362 100% 0 0

Chromosomal Locations for CCDS 46998.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 1717180 1717428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1717516 1717675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1718152 1718626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1720633 1720837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGGACAGCCCCGAGGTGACCTTCACTCTCGCCTATCTGGTGTTCGCCGTGTGCTTCGTGTTCACGCCCA
ACGAGTTCCACGCGGCGGGGCTCACGGTGCAGAACCTGCTGTCGGGCTGGCTGGGCAGCGAGGACGCCGC
CTTCGTGCCCTTCCACTTGCGCCGCACGGCCGCCACGCTGTTGTGCCACTCGCTGCTGCCGCTCGGCTAC
TATGTGGGCATGTGCCTTGCGGCTTCAGAAAAGCGGCTCCACGCCCTCAGCCAGGCCCCTGAGGCCTGGC
GGCTCTTCCTGCTGCTGGCCGTGACCCTCCCCTCCATCGCCTGCATCCTGATCTACTACTGGTCCCGTGA
CCGGTGGGCCTGCCACCCACTGGCGCGCACCCTGGCCCTCTACGCCCTCCCACAGTCTGGCTGGCAGGCT
GTTGCCTCCTCTGTCAACACTGAGTTCCGGCGGATTGACAAGTTTGCCACCGGTGCACCAGGTGCCCGTG
TGATTGTGACAGACACGTGGGTGATGAAGGTAACCACCTACCGAGTGCACGTGGCCCAGCAGCAGGACGT
GCACCTGACTGTGACGGAGTCTCGGCAGCATGAGCTCTCGCCAGACTCGAACTTGCCCGTGCAGCTCCTC
ACCATCCGTGTGGCCAGCACCAACCCTGCTGTGCAGGCCTTTGACATCTGGCTGAACTCCACTGAGTACG
GGGAGCTCTGCGAGAAGCTCCGGGCACCCATCCGCAGGGCAGCCCATGTGGTCATCCACCAGAGCCTGGG
CGACCTGTTCCTGGAGACATTTGCCTCCCTGGTAGAGGTCAACCCGGCCTACTCAGTGCCCAGCAGCCAG
GAGCTGGAGGCCTGCATAGGCTGCATGCAGACACGTGCCAGCGTGAAGCTGGTGAAGACCTGCCAGGAGG
CAGCCACAGGCGAGTGCCAGCAGTGTTACTGCCGCCCCATGTGGTGCCTCACCTGCATGGGCAAGTGGTT
CGCCAGCCGCCAGGACCCCCTGCGCCCTGACACCTGGCTGGCCAGCCGCGTGCCCTGCCCCACCTGCCGC
GCACGCTTCTGCATCCTGGATGTGTGCACCGTGCGCTGA

Translation (362 aa):
MDSPEVTFTLAYLVFAVCFVFTPNEFHAAGLTVQNLLSGWLGSEDAAFVPFHLRRTAATLLCHSLLPLGY
YVGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSIACILIYYWSRDRWACHPLARTLALYALPQSGWQA
VASSVNTEFRRIDKFATGAPGARVIVTDTWVMKVTTYRVHVAQQQDVHLTVTESRQHELSPDSNLPVQLL
TIRVASTNPAVQAFDIWLNSTEYGELCEKLRAPIRRAAHVVIHQSLGDLFLETFASLVEVNPAYSVPSSQ
ELEACIGCMQTRASVKLVKTCQEAATGECQQCYCRPMWCLTCMGKWFASRQDPLRPDTWLASRVPCPTCR
ARFCILDVCTVR


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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